miRNA display CGI


Results 101 - 120 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 96816 0.69 0.579655
Target:  5'- gUCUGUucucggACCuGCGggUGCGCAGcCGCGGCg -3'
miRNA:   3'- -GGACG------UGGuCGU--GCGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 21184 0.69 0.579655
Target:  5'- --cGgACCuGCGCGCGCAGgucCGCGuACu -3'
miRNA:   3'- ggaCgUGGuCGUGCGCGUCa--GCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 1517 0.69 0.586698
Target:  5'- --cGCGCCAGCGCGUccgccacuucguguGCGGgcgGCGACc -3'
miRNA:   3'- ggaCGUGGUCGUGCG--------------CGUCag-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 18268 0.69 0.588713
Target:  5'- aCCUGCucggugaGCC-GCACGCcCAG-CGCGAUg -3'
miRNA:   3'- -GGACG-------UGGuCGUGCGcGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 43833 0.69 0.598808
Target:  5'- gCUGCagcggGCCGGCG-GCGCGGUggagaucguguacUGCGACg -3'
miRNA:   3'- gGACG-----UGGUCGUgCGCGUCA-------------GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 98878 0.7 0.529997
Target:  5'- aCC-GCGCC-GCGCGCGCGGacugCGCG-Cu -3'
miRNA:   3'- -GGaCGUGGuCGUGCGCGUCa---GCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 128687 0.7 0.529997
Target:  5'- cCCcGC-CgGGCACGCGCGcUgGCGACg -3'
miRNA:   3'- -GGaCGuGgUCGUGCGCGUcAgCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 128303 0.72 0.445132
Target:  5'- gCCUgGCGCCGucuGCucGCGCGCGGcgcgagCGCGACu -3'
miRNA:   3'- -GGA-CGUGGU---CG--UGCGCGUCa-----GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 38480 0.72 0.454198
Target:  5'- --cGCGCCgGGCGCGCGC-GUCGCcGAg -3'
miRNA:   3'- ggaCGUGG-UCGUGCGCGuCAGCG-CUg -5'
25508 3' -58.6 NC_005337.1 + 6627 0.72 0.455111
Target:  5'- --gGCGCCGGCACGcCGCAGgguugaagaccgccgCGCGGu -3'
miRNA:   3'- ggaCGUGGUCGUGC-GCGUCa--------------GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 16916 0.71 0.463364
Target:  5'- uUCUGgACCAGCACGgGCucGUCGaggaaGACc -3'
miRNA:   3'- -GGACgUGGUCGUGCgCGu-CAGCg----CUG- -5'
25508 3' -58.6 NC_005337.1 + 33390 0.71 0.463364
Target:  5'- cCCUGCACCGGCugcuccAUGCGC-GUCauCGGCa -3'
miRNA:   3'- -GGACGUGGUCG------UGCGCGuCAGc-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 29050 0.71 0.463364
Target:  5'- gCCggGCGCCcGCgaGCGCGCAGcUCaGCGGCc -3'
miRNA:   3'- -GGa-CGUGGuCG--UGCGCGUC-AG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 115556 0.71 0.472626
Target:  5'- --gGCGCCAGCGCGCcGCAGcuccUCGCcggGGCc -3'
miRNA:   3'- ggaCGUGGUCGUGCG-CGUC----AGCG---CUG- -5'
25508 3' -58.6 NC_005337.1 + 52723 0.71 0.48198
Target:  5'- aCCUGCGCgAGCuGCGCGCcgagcugaAGcgCGCGAa -3'
miRNA:   3'- -GGACGUGgUCG-UGCGCG--------UCa-GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 119848 0.71 0.48198
Target:  5'- cCCgGCGCCAGCgGCG-GCAcGUCGCGcgGCa -3'
miRNA:   3'- -GGaCGUGGUCG-UGCgCGU-CAGCGC--UG- -5'
25508 3' -58.6 NC_005337.1 + 105327 0.71 0.50095
Target:  5'- gUUGC-CCAGCACGUGCGGcggCGgGAg -3'
miRNA:   3'- gGACGuGGUCGUGCGCGUCa--GCgCUg -5'
25508 3' -58.6 NC_005337.1 + 93802 0.7 0.510558
Target:  5'- -gUGCGUCAGCAgcUGCGCAGcUGCGGCg -3'
miRNA:   3'- ggACGUGGUCGU--GCGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 52163 0.7 0.510558
Target:  5'- -aUGCGCCAGCgcggcuucgacgGCGCGCAGaCGgcCGACc -3'
miRNA:   3'- ggACGUGGUCG------------UGCGCGUCaGC--GCUG- -5'
25508 3' -58.6 NC_005337.1 + 12921 0.7 0.520242
Target:  5'- cCCgUGCGCCgaguGGCugGUGCGG-CGCGuCa -3'
miRNA:   3'- -GG-ACGUGG----UCGugCGCGUCaGCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.