miRNA display CGI


Results 121 - 140 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 3227 0.69 0.624134
Target:  5'- uCC-GCACCcagggccaggaGGCGCGCGCacgccuugucguugcGGUgCGCGGCg -3'
miRNA:   3'- -GGaCGUGG-----------UCGUGCGCG---------------UCA-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 81754 0.68 0.629208
Target:  5'- gCCgGCGCCGuucuccuGCGCGUGCAgGUUGCG-Ca -3'
miRNA:   3'- -GGaCGUGGU-------CGUGCGCGU-CAGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 41333 0.69 0.579655
Target:  5'- --cGCACCAGCACGCuGUAGaa-CGGCg -3'
miRNA:   3'- ggaCGUGGUCGUGCG-CGUCagcGCUG- -5'
25508 3' -58.6 NC_005337.1 + 73536 0.7 0.559638
Target:  5'- --gGCACUcgAGUAcaucCGCGCGGUCGuCGACg -3'
miRNA:   3'- ggaCGUGG--UCGU----GCGCGUCAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 87618 0.7 0.558641
Target:  5'- gCUGCGCgAuCGCGCGCAGccccgacUCGCGGa -3'
miRNA:   3'- gGACGUGgUcGUGCGCGUC-------AGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 115556 0.71 0.472626
Target:  5'- --gGCGCCAGCGCGCcGCAGcuccUCGCcggGGCc -3'
miRNA:   3'- ggaCGUGGUCGUGCG-CGUC----AGCG---CUG- -5'
25508 3' -58.6 NC_005337.1 + 52723 0.71 0.48198
Target:  5'- aCCUGCGCgAGCuGCGCGCcgagcugaAGcgCGCGAa -3'
miRNA:   3'- -GGACGUGgUCG-UGCGCG--------UCa-GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 119848 0.71 0.48198
Target:  5'- cCCgGCGCCAGCgGCG-GCAcGUCGCGcgGCa -3'
miRNA:   3'- -GGaCGUGGUCG-UGCgCGU-CAGCGC--UG- -5'
25508 3' -58.6 NC_005337.1 + 105327 0.71 0.50095
Target:  5'- gUUGC-CCAGCACGUGCGGcggCGgGAg -3'
miRNA:   3'- gGACGuGGUCGUGCGCGUCa--GCgCUg -5'
25508 3' -58.6 NC_005337.1 + 93802 0.7 0.510558
Target:  5'- -gUGCGUCAGCAgcUGCGCAGcUGCGGCg -3'
miRNA:   3'- ggACGUGGUCGU--GCGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 52163 0.7 0.510558
Target:  5'- -aUGCGCCAGCgcggcuucgacgGCGCGCAGaCGgcCGACc -3'
miRNA:   3'- ggACGUGGUCG------------UGCGCGUCaGC--GCUG- -5'
25508 3' -58.6 NC_005337.1 + 12921 0.7 0.520242
Target:  5'- cCCgUGCGCCgaguGGCugGUGCGG-CGCGuCa -3'
miRNA:   3'- -GG-ACGUGG----UCGugCGCGUCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 28035 0.68 0.630222
Target:  5'- gCCUGcCGCCGGCACGCGac--CGCcGCc -3'
miRNA:   3'- -GGAC-GUGGUCGUGCGCgucaGCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 128687 0.7 0.529997
Target:  5'- cCCcGC-CgGGCACGCGCGcUgGCGACg -3'
miRNA:   3'- -GGaCGuGgUCGUGCGCGUcAgCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 98878 0.7 0.529997
Target:  5'- aCC-GCGCC-GCGCGCGCGGacugCGCG-Cu -3'
miRNA:   3'- -GGaCGUGGuCGUGCGCGUCa---GCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 4106 0.7 0.539818
Target:  5'- uCCU-CACC-GCGCGCGCGGagacgCGCgGACa -3'
miRNA:   3'- -GGAcGUGGuCGUGCGCGUCa----GCG-CUG- -5'
25508 3' -58.6 NC_005337.1 + 131145 0.7 0.5497
Target:  5'- gCUGUACCGGCGCGUGCuGcacaCGCuGCu -3'
miRNA:   3'- gGACGUGGUCGUGCGCGuCa---GCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 26399 0.7 0.5497
Target:  5'- aCUGCGgCAGCagguACGUGC--UCGCGGCg -3'
miRNA:   3'- gGACGUgGUCG----UGCGCGucAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 77888 0.7 0.5497
Target:  5'- gCCgaagagGCugCAGUacACGCGCAG-CGCGuGCa -3'
miRNA:   3'- -GGa-----CGugGUCG--UGCGCGUCaGCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 80671 0.7 0.5497
Target:  5'- aUCUGCGCgGcgcgcuuccGCGCGCGCAuGUgCGCGAg -3'
miRNA:   3'- -GGACGUGgU---------CGUGCGCGU-CA-GCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.