Results 141 - 160 of 354 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 69943 | 0.69 | 0.603865 |
Target: 5'- gCCgcgGCGCCacgcuccgcguggugGGCACGCGCaagacgccGGaCGCGACc -3' miRNA: 3'- -GGa--CGUGG---------------UCGUGCGCG--------UCaGCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 131145 | 0.7 | 0.5497 |
Target: 5'- gCUGUACCGGCGCGUGCuGcacaCGCuGCu -3' miRNA: 3'- gGACGUGGUCGUGCGCGuCa---GCGcUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 4106 | 0.7 | 0.539818 |
Target: 5'- uCCU-CACC-GCGCGCGCGGagacgCGCgGACa -3' miRNA: 3'- -GGAcGUGGuCGUGCGCGUCa----GCG-CUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 98878 | 0.7 | 0.529997 |
Target: 5'- aCC-GCGCC-GCGCGCGCGGacugCGCG-Cu -3' miRNA: 3'- -GGaCGUGGuCGUGCGCGUCa---GCGCuG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 128687 | 0.7 | 0.529997 |
Target: 5'- cCCcGC-CgGGCACGCGCGcUgGCGACg -3' miRNA: 3'- -GGaCGuGgUCGUGCGCGUcAgCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 12921 | 0.7 | 0.520242 |
Target: 5'- cCCgUGCGCCgaguGGCugGUGCGG-CGCGuCa -3' miRNA: 3'- -GG-ACGUGG----UCGugCGCGUCaGCGCuG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 52163 | 0.7 | 0.510558 |
Target: 5'- -aUGCGCCAGCgcggcuucgacgGCGCGCAGaCGgcCGACc -3' miRNA: 3'- ggACGUGGUCG------------UGCGCGUCaGC--GCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 93802 | 0.7 | 0.510558 |
Target: 5'- -gUGCGUCAGCAgcUGCGCAGcUGCGGCg -3' miRNA: 3'- ggACGUGGUCGU--GCGCGUCaGCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 105327 | 0.71 | 0.50095 |
Target: 5'- gUUGC-CCAGCACGUGCGGcggCGgGAg -3' miRNA: 3'- gGACGuGGUCGUGCGCGUCa--GCgCUg -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 26399 | 0.7 | 0.5497 |
Target: 5'- aCUGCGgCAGCagguACGUGC--UCGCGGCg -3' miRNA: 3'- gGACGUgGUCG----UGCGCGucAGCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 77888 | 0.7 | 0.5497 |
Target: 5'- gCCgaagagGCugCAGUacACGCGCAG-CGCGuGCa -3' miRNA: 3'- -GGa-----CGugGUCG--UGCGCGUCaGCGC-UG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 80671 | 0.7 | 0.5497 |
Target: 5'- aUCUGCGCgGcgcgcuuccGCGCGCGCAuGUgCGCGAg -3' miRNA: 3'- -GGACGUGgU---------CGUGCGCGU-CA-GCGCUg -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 43833 | 0.69 | 0.598808 |
Target: 5'- gCUGCagcggGCCGGCG-GCGCGGUggagaucguguacUGCGACg -3' miRNA: 3'- gGACG-----UGGUCGUgCGCGUCA-------------GCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 18268 | 0.69 | 0.588713 |
Target: 5'- aCCUGCucggugaGCC-GCACGCcCAG-CGCGAUg -3' miRNA: 3'- -GGACG-------UGGuCGUGCGcGUCaGCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 1517 | 0.69 | 0.586698 |
Target: 5'- --cGCGCCAGCGCGUccgccacuucguguGCGGgcgGCGACc -3' miRNA: 3'- ggaCGUGGUCGUGCG--------------CGUCag-CGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 21184 | 0.69 | 0.579655 |
Target: 5'- --cGgACCuGCGCGCGCAGgucCGCGuACu -3' miRNA: 3'- ggaCgUGGuCGUGCGCGUCa--GCGC-UG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 96816 | 0.69 | 0.579655 |
Target: 5'- gUCUGUucucggACCuGCGggUGCGCAGcCGCGGCg -3' miRNA: 3'- -GGACG------UGGuCGU--GCGCGUCaGCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 41333 | 0.69 | 0.579655 |
Target: 5'- --cGCACCAGCACGCuGUAGaa-CGGCg -3' miRNA: 3'- ggaCGUGGUCGUGCG-CGUCagcGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 73536 | 0.7 | 0.559638 |
Target: 5'- --gGCACUcgAGUAcaucCGCGCGGUCGuCGACg -3' miRNA: 3'- ggaCGUGG--UCGU----GCGCGUCAGC-GCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 87618 | 0.7 | 0.558641 |
Target: 5'- gCUGCGCgAuCGCGCGCAGccccgacUCGCGGa -3' miRNA: 3'- gGACGUGgUcGUGCGCGUC-------AGCGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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