miRNA display CGI


Results 81 - 100 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 114129 0.71 0.472626
Target:  5'- gCCUGCGgCAGCguggaGCGCGCcuUCGcCGACc -3'
miRNA:   3'- -GGACGUgGUCG-----UGCGCGucAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 55223 0.7 0.520242
Target:  5'- uCCUGguCuuCAGCACGCGCAagaacuccGUCGUGuACa -3'
miRNA:   3'- -GGACguG--GUCGUGCGCGU--------CAGCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 59786 0.7 0.538833
Target:  5'- gCCgGCGCCGGCACGCGaccacgaggccguCGGUgGUGGu -3'
miRNA:   3'- -GGaCGUGGUCGUGCGC-------------GUCAgCGCUg -5'
25508 3' -58.6 NC_005337.1 + 105038 0.7 0.559638
Target:  5'- uUCUGCgACCGGCAgGCGacgccCGGccgCGCGGCg -3'
miRNA:   3'- -GGACG-UGGUCGUgCGC-----GUCa--GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 13433 0.7 0.563627
Target:  5'- --aGCGCCAGCACcggggccucuggguaGCaGCAGUCGCa-- -3'
miRNA:   3'- ggaCGUGGUCGUG---------------CG-CGUCAGCGcug -5'
25508 3' -58.6 NC_005337.1 + 67100 0.69 0.586698
Target:  5'- cCCgGCGCCgugAGCuCGCGCagguugcgcaucacGGUCGCGAa -3'
miRNA:   3'- -GGaCGUGG---UCGuGCGCG--------------UCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 78711 0.69 0.598808
Target:  5'- uCgUGUACCcgagcgaGGCGCGCGCGGUgGaCGAg -3'
miRNA:   3'- -GgACGUGG-------UCGUGCGCGUCAgC-GCUg -5'
25508 3' -58.6 NC_005337.1 + 97779 0.72 0.427308
Target:  5'- --cGCGCCgAGCGC-CGCGGcCGCGGCc -3'
miRNA:   3'- ggaCGUGG-UCGUGcGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 33037 0.72 0.418556
Target:  5'- uCCaGCGCgAGCACGCGCGcGgacgccucCGCGACc -3'
miRNA:   3'- -GGaCGUGgUCGUGCGCGU-Ca-------GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 45949 0.73 0.392968
Target:  5'- --cGCGCCGGCGCGCGUGGcguccaCGCuGACg -3'
miRNA:   3'- ggaCGUGGUCGUGCGCGUCa-----GCG-CUG- -5'
25508 3' -58.6 NC_005337.1 + 37215 0.69 0.620077
Target:  5'- aCCgcGCGCC-GCGCGUGC-GUgGCGAUg -3'
miRNA:   3'- -GGa-CGUGGuCGUGCGCGuCAgCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 39521 0.68 0.630222
Target:  5'- aCCgcGgGCCAGCu--CGCGGUCGUGGCu -3'
miRNA:   3'- -GGa-CgUGGUCGugcGCGUCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 91658 0.68 0.64037
Target:  5'- aCCgcgGUGCCgcacauggcgGGCGCuaGCAGcCGCGACg -3'
miRNA:   3'- -GGa--CGUGG----------UCGUGcgCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 12281 0.68 0.64037
Target:  5'- --cGCACCc-CGCGCGCAGgagcUCGCGcACg -3'
miRNA:   3'- ggaCGUGGucGUGCGCGUC----AGCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 92870 0.68 0.64037
Target:  5'- cCCgcgGaCGCCGGacgucaucugccCGCGCGCGGUUGcCGGCg -3'
miRNA:   3'- -GGa--C-GUGGUC------------GUGCGCGUCAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 133682 0.78 0.200922
Target:  5'- gCCUGCguggcguucGCCGGCGgcuucCGCGCGGcCGCGGCg -3'
miRNA:   3'- -GGACG---------UGGUCGU-----GCGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 30634 0.77 0.226994
Target:  5'- gCCUGCGCgCAGCcgaggaugGCGCGCGG-CGCGGa -3'
miRNA:   3'- -GGACGUG-GUCG--------UGCGCGUCaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 47876 0.75 0.27461
Target:  5'- --cGCGCCGGaCGCGCGCAGcCGCcuGGCg -3'
miRNA:   3'- ggaCGUGGUC-GUGCGCGUCaGCG--CUG- -5'
25508 3' -58.6 NC_005337.1 + 66303 0.74 0.322557
Target:  5'- cCCUGgACCgcgugAGCGC-CGCGGUCGCGGg -3'
miRNA:   3'- -GGACgUGG-----UCGUGcGCGUCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 132770 0.73 0.376483
Target:  5'- --cGCGCUGGCGCGCGCcGagGUGACg -3'
miRNA:   3'- ggaCGUGGUCGUGCGCGuCagCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.