Results 101 - 120 of 354 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 3494 | 0.68 | 0.64037 |
Target: 5'- gCC-GCACCGGCgGCGCcCAGgucugCGCGAa -3' miRNA: 3'- -GGaCGUGGUCG-UGCGcGUCa----GCGCUg -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 23674 | 0.68 | 0.644428 |
Target: 5'- cCCgGCAuCCuGCuCGCGCAGUucucgcacaugaagaCGCGGCu -3' miRNA: 3'- -GGaCGU-GGuCGuGCGCGUCA---------------GCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 41590 | 0.68 | 0.650511 |
Target: 5'- aCgGCccCCAGCGaggGCGUGGUCGUGGCg -3' miRNA: 3'- gGaCGu-GGUCGUg--CGCGUCAGCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 113141 | 0.68 | 0.660638 |
Target: 5'- --cGCugCGGUACGUGCuGuUCGCGGu -3' miRNA: 3'- ggaCGugGUCGUGCGCGuC-AGCGCUg -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 85865 | 0.68 | 0.670742 |
Target: 5'- --aGCGCCAGUACGCcgaGCGucuccGUgCGCGGCu -3' miRNA: 3'- ggaCGUGGUCGUGCG---CGU-----CA-GCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 105038 | 0.7 | 0.559638 |
Target: 5'- uUCUGCgACCGGCAgGCGacgccCGGccgCGCGGCg -3' miRNA: 3'- -GGACG-UGGUCGUgCGC-----GUCa--GCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 59786 | 0.7 | 0.538833 |
Target: 5'- gCCgGCGCCGGCACGCGaccacgaggccguCGGUgGUGGu -3' miRNA: 3'- -GGaCGUGGUCGUGCGC-------------GUCAgCGCUg -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 133682 | 0.78 | 0.200922 |
Target: 5'- gCCUGCguggcguucGCCGGCGgcuucCGCGCGGcCGCGGCg -3' miRNA: 3'- -GGACG---------UGGUCGU-----GCGCGUCaGCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 30634 | 0.77 | 0.226994 |
Target: 5'- gCCUGCGCgCAGCcgaggaugGCGCGCGG-CGCGGa -3' miRNA: 3'- -GGACGUG-GUCG--------UGCGCGUCaGCGCUg -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 47876 | 0.75 | 0.27461 |
Target: 5'- --cGCGCCGGaCGCGCGCAGcCGCcuGGCg -3' miRNA: 3'- ggaCGUGGUC-GUGCGCGUCaGCG--CUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 66303 | 0.74 | 0.322557 |
Target: 5'- cCCUGgACCgcgugAGCGC-CGCGGUCGCGGg -3' miRNA: 3'- -GGACgUGG-----UCGUGcGCGUCAGCGCUg -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 132770 | 0.73 | 0.376483 |
Target: 5'- --cGCGCUGGCGCGCGCcGagGUGACg -3' miRNA: 3'- ggaCGUGGUCGUGCGCGuCagCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 45949 | 0.73 | 0.392968 |
Target: 5'- --cGCGCCGGCGCGCGUGGcguccaCGCuGACg -3' miRNA: 3'- ggaCGUGGUCGUGCGCGUCa-----GCG-CUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 33037 | 0.72 | 0.418556 |
Target: 5'- uCCaGCGCgAGCACGCGCGcGgacgccucCGCGACc -3' miRNA: 3'- -GGaCGUGgUCGUGCGCGU-Ca-------GCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 97779 | 0.72 | 0.427308 |
Target: 5'- --cGCGCCgAGCGC-CGCGGcCGCGGCc -3' miRNA: 3'- ggaCGUGG-UCGUGcGCGUCaGCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 104481 | 0.72 | 0.454198 |
Target: 5'- --aGCACgCggAGCACGCGCAG-CgGCGACa -3' miRNA: 3'- ggaCGUG-G--UCGUGCGCGUCaG-CGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 87808 | 0.72 | 0.457853 |
Target: 5'- gCUGC-CCGGgagcucgcggcgcgcCGCGCGCAGaUCGCGAa -3' miRNA: 3'- gGACGuGGUC---------------GUGCGCGUC-AGCGCUg -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 104952 | 0.71 | 0.463364 |
Target: 5'- gCCUGCugcucaccgacuACCGGCACGUgaGCGG-CGUGAUg -3' miRNA: 3'- -GGACG------------UGGUCGUGCG--CGUCaGCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 114129 | 0.71 | 0.472626 |
Target: 5'- gCCUGCGgCAGCguggaGCGCGCcuUCGcCGACc -3' miRNA: 3'- -GGACGUgGUCG-----UGCGCGucAGC-GCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 55223 | 0.7 | 0.520242 |
Target: 5'- uCCUGguCuuCAGCACGCGCAagaacuccGUCGUGuACa -3' miRNA: 3'- -GGACguG--GUCGUGCGCGU--------CAGCGC-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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