miRNA display CGI


Results 121 - 140 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 2219 0.73 0.384667
Target:  5'- cCCggGcCGCgAGCGCGCGCAGgaaccgCGCGAg -3'
miRNA:   3'- -GGa-C-GUGgUCGUGCGCGUCa-----GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 85758 0.73 0.398847
Target:  5'- gUCUGCugCAGCucauUGCGUauccgcucguugauGGUCGUGACa -3'
miRNA:   3'- -GGACGugGUCGu---GCGCG--------------UCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 62613 0.68 0.660638
Target:  5'- gCCgUGCACCcGCGCGUugaAGUgCGCGGCc -3'
miRNA:   3'- -GG-ACGUGGuCGUGCGcg-UCA-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 62997 0.68 0.64747
Target:  5'- --cGCACCAGCGCcacgcggcgcaugaGCGC-GUUGuCGACg -3'
miRNA:   3'- ggaCGUGGUCGUG--------------CGCGuCAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 91869 0.68 0.64037
Target:  5'- gCCgGCGCaCAGCGaggcCGCGC-GcCGCGGCg -3'
miRNA:   3'- -GGaCGUG-GUCGU----GCGCGuCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 108921 0.72 0.454198
Target:  5'- --gGCACCAGCgagACGCGC---CGCGACg -3'
miRNA:   3'- ggaCGUGGUCG---UGCGCGucaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 53589 0.71 0.463364
Target:  5'- uCCUcGCGCaCAuGCGCGCGCGGaagCGCGcCg -3'
miRNA:   3'- -GGA-CGUG-GU-CGUGCGCGUCa--GCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 52691 0.71 0.471695
Target:  5'- aCUGCACCAuccugguGUACGCGCAGgaguaCGACc -3'
miRNA:   3'- gGACGUGGU-------CGUGCGCGUCagc--GCUG- -5'
25508 3' -58.6 NC_005337.1 + 58820 0.7 0.520242
Target:  5'- gCUGCGCCAGaucgucggGCGCGCcGU-GCGGCu -3'
miRNA:   3'- gGACGUGGUCg-------UGCGCGuCAgCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 123610 0.7 0.529997
Target:  5'- aCCcGcCGCCGGCcgGCGCGCGGUCcauaGACg -3'
miRNA:   3'- -GGaC-GUGGUCG--UGCGCGUCAGcg--CUG- -5'
25508 3' -58.6 NC_005337.1 + 52507 0.7 0.5497
Target:  5'- gCCaUGCGCaaccuGCACGCGCAGgagaacggCGcCGGCg -3'
miRNA:   3'- -GG-ACGUGgu---CGUGCGCGUCa-------GC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 102924 0.7 0.559638
Target:  5'- uCCUGCgACCAcaagcugguGCugGUGCAGU-GCGAg -3'
miRNA:   3'- -GGACG-UGGU---------CGugCGCGUCAgCGCUg -5'
25508 3' -58.6 NC_005337.1 + 132716 0.69 0.569624
Target:  5'- gCC-GCGCCAuGCGCGCgguaucaaGCGGUCGCcGCc -3'
miRNA:   3'- -GGaCGUGGU-CGUGCG--------CGUCAGCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 67100 0.69 0.586698
Target:  5'- cCCgGCGCCgugAGCuCGCGCagguugcgcaucacGGUCGCGAa -3'
miRNA:   3'- -GGaCGUGG---UCGuGCGCG--------------UCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 10301 0.69 0.598808
Target:  5'- --cGCAUCGGCGCcguucgcgucuauGUGCAG-CGCGACc -3'
miRNA:   3'- ggaCGUGGUCGUG-------------CGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 132587 0.69 0.599819
Target:  5'- cCCUGCACUucgccaccgGGCAC-CGCAacGaCGCGGCg -3'
miRNA:   3'- -GGACGUGG---------UCGUGcGCGU--CaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 64284 0.69 0.620077
Target:  5'- aCUGCAUgAgguGCACG-GCGGUCGCGuCc -3'
miRNA:   3'- gGACGUGgU---CGUGCgCGUCAGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 1876 0.68 0.630222
Target:  5'- gCUGUucACCAGCGCuauGCGCAcUCgGCGGCc -3'
miRNA:   3'- gGACG--UGGUCGUG---CGCGUcAG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 8241 0.68 0.634282
Target:  5'- aCCgGCGCgCAugagacacacGCACGCGCGGggguugaacgcggcCGCGACg -3'
miRNA:   3'- -GGaCGUG-GU----------CGUGCGCGUCa-------------GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 99472 0.68 0.64037
Target:  5'- gCUGgcCACCcGCgACGCGCAGaUgGCGACc -3'
miRNA:   3'- gGAC--GUGGuCG-UGCGCGUC-AgCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.