Results 41 - 48 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 24832 | 0.67 | 0.866995 |
Target: 5'- cUCGCCGUGcUCGaGCGGCgCGUGcucGAGg -3' miRNA: 3'- -GGCGGCACuAGUcCGCCGaGUAU---CUC- -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 24757 | 0.68 | 0.809591 |
Target: 5'- gCGCCGcg--CGGGCGGCUCAc---- -3' miRNA: 3'- gGCGGCacuaGUCCGCCGAGUaucuc -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 23125 | 0.71 | 0.66076 |
Target: 5'- cCCGCCGUGGUC--GCGGCcaugcgccccuuccUCcgGGAGa -3' miRNA: 3'- -GGCGGCACUAGucCGCCG--------------AGuaUCUC- -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 18662 | 0.68 | 0.800676 |
Target: 5'- gCCGCCGg---CGGGCGGaUCcgAGGGc -3' miRNA: 3'- -GGCGGCacuaGUCCGCCgAGuaUCUC- -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 8083 | 0.67 | 0.859383 |
Target: 5'- gCGuCCGUGGgcacgagcacguUCAGGCGGUUCAcAGu- -3' miRNA: 3'- gGC-GGCACU------------AGUCCGCCGAGUaUCuc -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 7048 | 0.66 | 0.919812 |
Target: 5'- aCGUCG-GggCGGGCGGCgggguugcgcgCGUAGAc -3' miRNA: 3'- gGCGGCaCuaGUCCGCCGa----------GUAUCUc -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 3453 | 0.67 | 0.859383 |
Target: 5'- gCCGCC-UGAUCAcGGCGGCac-UGGGu -3' miRNA: 3'- -GGCGGcACUAGU-CCGCCGaguAUCUc -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 1976 | 0.67 | 0.849177 |
Target: 5'- gCCGCCGUGcacgccgggucggcGUCAGcuGCGGCUUGUccGGGu -3' miRNA: 3'- -GGCGGCAC--------------UAGUC--CGCCGAGUA--UCUc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home