Results 41 - 48 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 25508 | 5' | -55.6 | NC_005337.1 | + | 94783 | 0.7 | 0.694438 |
|
Target: 5'- aCCGCCGgucGAUC-GGCGGC--GUAGAc -3' miRNA: 3'- -GGCGGCa--CUAGuCCGCCGagUAUCUc -5' |
|||||||
| 25508 | 5' | -55.6 | NC_005337.1 | + | 59652 | 0.7 | 0.734459 |
|
Target: 5'- cCCGCCGggGAacaUCAcgucgucGCGGCUCcgGGAGg -3' miRNA: 3'- -GGCGGCa-CU---AGUc------CGCCGAGuaUCUC- -5' |
|||||||
| 25508 | 5' | -55.6 | NC_005337.1 | + | 46126 | 0.69 | 0.791607 |
|
Target: 5'- gUCGUCcUGGUCGGGCGGCaccaGGAGa -3' miRNA: 3'- -GGCGGcACUAGUCCGCCGaguaUCUC- -5' |
|||||||
| 25508 | 5' | -55.6 | NC_005337.1 | + | 18662 | 0.68 | 0.800676 |
|
Target: 5'- gCCGCCGg---CGGGCGGaUCcgAGGGc -3' miRNA: 3'- -GGCGGCacuaGUCCGCCgAGuaUCUC- -5' |
|||||||
| 25508 | 5' | -55.6 | NC_005337.1 | + | 66318 | 0.68 | 0.800676 |
|
Target: 5'- gCGCCGcGGUCGcgggcuGGCGacacguGCUCGUGGAGc -3' miRNA: 3'- gGCGGCaCUAGU------CCGC------CGAGUAUCUC- -5' |
|||||||
| 25508 | 5' | -55.6 | NC_005337.1 | + | 116281 | 0.68 | 0.808707 |
|
Target: 5'- uCCGCCgGUGAUCgAGGaguaccuCGGCUCccgccccuccAUGGAGc -3' miRNA: 3'- -GGCGG-CACUAG-UCC-------GCCGAG----------UAUCUC- -5' |
|||||||
| 25508 | 5' | -55.6 | NC_005337.1 | + | 24757 | 0.68 | 0.809591 |
|
Target: 5'- gCGCCGcg--CGGGCGGCUCAc---- -3' miRNA: 3'- gGCGGCacuaGUCCGCCGAGUaucuc -5' |
|||||||
| 25508 | 5' | -55.6 | NC_005337.1 | + | 130827 | 1.1 | 0.002659 |
|
Target: 5'- gCCGCCGUGAUCAGGCGGCUCAUAGAGc -3' miRNA: 3'- -GGCGGCACUAGUCCGCCGAGUAUCUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home