miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25509 3' -57.3 NC_005337.1 + 66917 0.66 0.861032
Target:  5'- aUGUACUcggUCaugGGCUGcGCCaUCGUGGAg -3'
miRNA:   3'- gACAUGG---AGg--CUGAC-CGGcAGCACCU- -5'
25509 3' -57.3 NC_005337.1 + 115550 0.66 0.836616
Target:  5'- gUGUucuCCUCCGAgcacagcgcgcgaCUGGCCG-CGUGu- -3'
miRNA:   3'- gACAu--GGAGGCU-------------GACCGGCaGCACcu -5'
25509 3' -57.3 NC_005337.1 + 30039 0.67 0.812181
Target:  5'- -cGUGCCcuUCUGGCUGGUgCG-CGUGGu -3'
miRNA:   3'- gaCAUGG--AGGCUGACCG-GCaGCACCu -5'
25509 3' -57.3 NC_005337.1 + 52114 0.67 0.803432
Target:  5'- -gGUGCgCgacgggCCGGCcaUGGCCuUCGUGGAc -3'
miRNA:   3'- gaCAUG-Ga-----GGCUG--ACCGGcAGCACCU- -5'
25509 3' -57.3 NC_005337.1 + 55007 0.67 0.802548
Target:  5'- -gGUACCagcagUCUGagggcgacuucguGCUGGCCuUCGUGGAg -3'
miRNA:   3'- gaCAUGG-----AGGC-------------UGACCGGcAGCACCU- -5'
25509 3' -57.3 NC_005337.1 + 129358 0.67 0.794529
Target:  5'- -cGUG-CUCCGGgaGGCCGUCGUc-- -3'
miRNA:   3'- gaCAUgGAGGCUgaCCGGCAGCAccu -5'
25509 3' -57.3 NC_005337.1 + 75608 0.67 0.794529
Target:  5'- gUGUACCUggggagcgCCGaggacGCgcgGGCCGUCGUGa- -3'
miRNA:   3'- gACAUGGA--------GGC-----UGa--CCGGCAGCACcu -5'
25509 3' -57.3 NC_005337.1 + 48307 0.67 0.776301
Target:  5'- -aGUACCUCCaGCggGGCaCGgggaugugCGUGGAc -3'
miRNA:   3'- gaCAUGGAGGcUGa-CCG-GCa-------GCACCU- -5'
25509 3' -57.3 NC_005337.1 + 119547 0.68 0.718854
Target:  5'- -gGUGCag-CGGCUGGCgaugggCGUCGUGGAg -3'
miRNA:   3'- gaCAUGgagGCUGACCG------GCAGCACCU- -5'
25509 3' -57.3 NC_005337.1 + 29363 0.69 0.699024
Target:  5'- -gGUGCCcUCGACggcGGCCGUCGcGGc -3'
miRNA:   3'- gaCAUGGaGGCUGa--CCGGCAGCaCCu -5'
25509 3' -57.3 NC_005337.1 + 80102 0.7 0.638483
Target:  5'- -cGUGCCUgaagCCGAgcCaGGCgGUCGUGGAc -3'
miRNA:   3'- gaCAUGGA----GGCU--GaCCGgCAGCACCU- -5'
25509 3' -57.3 NC_005337.1 + 75099 0.71 0.597911
Target:  5'- -gGUGCC-CCGACgcacGGCCugggggaggaacGUCGUGGGg -3'
miRNA:   3'- gaCAUGGaGGCUGa---CCGG------------CAGCACCU- -5'
25509 3' -57.3 NC_005337.1 + 33404 0.74 0.399663
Target:  5'- -aGUAgCUCUGGC-GGCCGcCGUGGAu -3'
miRNA:   3'- gaCAUgGAGGCUGaCCGGCaGCACCU- -5'
25509 3' -57.3 NC_005337.1 + 130365 1.08 0.002278
Target:  5'- cCUGUACCUCCGACUGGCCGUCGUGGAc -3'
miRNA:   3'- -GACAUGGAGGCUGACCGGCAGCACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.