Results 61 - 80 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 93636 | 0.68 | 0.738392 |
Target: 5'- gUCUUCAuGAaGUUCAgcaaGuCGCGGCCGGc -3' miRNA: 3'- -AGGAGUuCUgCGAGUa---C-GCGCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 131313 | 0.68 | 0.718855 |
Target: 5'- gCCgagugCGAGgcggagaccGCGCUCAUGCGC-GCCGu -3' miRNA: 3'- aGGa----GUUC---------UGCGAGUACGCGcCGGCc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 130729 | 0.68 | 0.728664 |
Target: 5'- cUCgUCGAG-CGCUCGUG-GCcGCUGGg -3' miRNA: 3'- -AGgAGUUCuGCGAGUACgCGcCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 58108 | 0.68 | 0.708972 |
Target: 5'- uUCUUCAgcaAGACGC-CggGCGUGGggaCCGGg -3' miRNA: 3'- -AGGAGU---UCUGCGaGuaCGCGCC---GGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 70789 | 0.68 | 0.718855 |
Target: 5'- -aCUC-GGAgGC-CAUGCgGCGGCUGGu -3' miRNA: 3'- agGAGuUCUgCGaGUACG-CGCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 19996 | 0.68 | 0.718855 |
Target: 5'- gUCCUC-GGGCaGCaCGUGCuGCGGgCGGa -3' miRNA: 3'- -AGGAGuUCUG-CGaGUACG-CGCCgGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 102995 | 0.68 | 0.718855 |
Target: 5'- cCCUC-GGACGUgccCGaGCGCGGCCc- -3' miRNA: 3'- aGGAGuUCUGCGa--GUaCGCGCCGGcc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 46008 | 0.68 | 0.728664 |
Target: 5'- gUCCUCcgcGGCGCccgCcgGCGCG-CCGGc -3' miRNA: 3'- -AGGAGuu-CUGCGa--GuaCGCGCcGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 122198 | 0.68 | 0.737423 |
Target: 5'- gCCUCAucgccgcGGGCGCggacgugUcgGCGCGcacGCCGGa -3' miRNA: 3'- aGGAGU-------UCUGCGa------GuaCGCGC---CGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 74902 | 0.68 | 0.748029 |
Target: 5'- gCCg-GGGGCGUgaugGCGCGGCUGGc -3' miRNA: 3'- aGGagUUCUGCGaguaCGCGCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 88554 | 0.68 | 0.738392 |
Target: 5'- aUCCUCAucgccACGCUg--GCG-GGCCGGg -3' miRNA: 3'- -AGGAGUuc---UGCGAguaCGCgCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 129876 | 0.68 | 0.748029 |
Target: 5'- cCCUCGAuacggcaucucGcCGCUgcaCAUG-GCGGCCGGg -3' miRNA: 3'- aGGAGUU-----------CuGCGA---GUACgCGCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 65971 | 0.69 | 0.657758 |
Target: 5'- cUCCUCGGGcACGCgCGUccacgccGC-CGGCCGGc -3' miRNA: 3'- -AGGAGUUC-UGCGaGUA-------CGcGCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 89932 | 0.69 | 0.668887 |
Target: 5'- cUCCUCAcagaGGGcCGCgCGgauaaagGCGCGGCCGc -3' miRNA: 3'- -AGGAGU----UCU-GCGaGUa------CGCGCCGGCc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 21900 | 0.69 | 0.658771 |
Target: 5'- cUCCUcCAGGACGCgcgcuUCAUGgagGUGGCCGc -3' miRNA: 3'- -AGGA-GUUCUGCG-----AGUACg--CGCCGGCc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 83962 | 0.69 | 0.658771 |
Target: 5'- gUCCgcgCAGGGCaGCggcgGCGCGGgCGGg -3' miRNA: 3'- -AGGa--GUUCUG-CGaguaCGCGCCgGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 101502 | 0.69 | 0.668887 |
Target: 5'- -gCUCAugcgcgaGCGCUCc-GCGCGGCUGGa -3' miRNA: 3'- agGAGUuc-----UGCGAGuaCGCGCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 128630 | 0.69 | 0.699025 |
Target: 5'- cCCUCGguuucccugcuGGAUa-UCcUGCGCGGCCGGu -3' miRNA: 3'- aGGAGU-----------UCUGcgAGuACGCGCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 66523 | 0.69 | 0.667876 |
Target: 5'- gCCggcCGAGACGCUgGagcUGCGCGccgcgccGCCGGu -3' miRNA: 3'- aGGa--GUUCUGCGAgU---ACGCGC-------CGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 45401 | 0.69 | 0.699025 |
Target: 5'- cCCggugcuGACGCUCcacUGCGCGGCguCGGa -3' miRNA: 3'- aGGaguu--CUGCGAGu--ACGCGCCG--GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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