miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25509 5' -57.5 NC_005337.1 + 45401 0.69 0.699025
Target:  5'- cCCggugcuGACGCUCcacUGCGCGGCguCGGa -3'
miRNA:   3'- aGGaguu--CUGCGAGu--ACGCGCCG--GCC- -5'
25509 5' -57.5 NC_005337.1 + 123546 0.69 0.668887
Target:  5'- uUCCUCGAcAUcCUCcgGCGcCGGUCGGa -3'
miRNA:   3'- -AGGAGUUcUGcGAGuaCGC-GCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 100014 0.69 0.648634
Target:  5'- gUCCUCAAGGCGUaCcuGUGCGCGcGCa-- -3'
miRNA:   3'- -AGGAGUUCUGCGaG--UACGCGC-CGgcc -5'
25509 5' -57.5 NC_005337.1 + 65971 0.69 0.657758
Target:  5'- cUCCUCGGGcACGCgCGUccacgccGC-CGGCCGGc -3'
miRNA:   3'- -AGGAGUUC-UGCGaGUA-------CGcGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 66523 0.69 0.667876
Target:  5'- gCCggcCGAGACGCUgGagcUGCGCGccgcgccGCCGGu -3'
miRNA:   3'- aGGa--GUUCUGCGAgU---ACGCGC-------CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 89932 0.69 0.668887
Target:  5'- cUCCUCAcagaGGGcCGCgCGgauaaagGCGCGGCCGc -3'
miRNA:   3'- -AGGAGU----UCU-GCGaGUa------CGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 132415 0.69 0.668887
Target:  5'- aUCUUCGAGGaGCUCAUcaGcCGCGGCUGc -3'
miRNA:   3'- -AGGAGUUCUgCGAGUA--C-GCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 130950 0.69 0.678974
Target:  5'- uUCCU--GGACGC-CG-GCGUGGCCGu -3'
miRNA:   3'- -AGGAguUCUGCGaGUaCGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 46008 0.68 0.728664
Target:  5'- gUCCUCcgcGGCGCccgCcgGCGCG-CCGGc -3'
miRNA:   3'- -AGGAGuu-CUGCGa--GuaCGCGCcGGCC- -5'
25509 5' -57.5 NC_005337.1 + 58108 0.68 0.708972
Target:  5'- uUCUUCAgcaAGACGC-CggGCGUGGggaCCGGg -3'
miRNA:   3'- -AGGAGU---UCUGCGaGuaCGCGCC---GGCC- -5'
25509 5' -57.5 NC_005337.1 + 88554 0.68 0.738392
Target:  5'- aUCCUCAucgccACGCUg--GCG-GGCCGGg -3'
miRNA:   3'- -AGGAGUuc---UGCGAguaCGCgCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 129876 0.68 0.748029
Target:  5'- cCCUCGAuacggcaucucGcCGCUgcaCAUG-GCGGCCGGg -3'
miRNA:   3'- aGGAGUU-----------CuGCGA---GUACgCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 74902 0.68 0.748029
Target:  5'- gCCg-GGGGCGUgaugGCGCGGCUGGc -3'
miRNA:   3'- aGGagUUCUGCGaguaCGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 131313 0.68 0.718855
Target:  5'- gCCgagugCGAGgcggagaccGCGCUCAUGCGC-GCCGu -3'
miRNA:   3'- aGGa----GUUC---------UGCGAGUACGCGcCGGCc -5'
25509 5' -57.5 NC_005337.1 + 23116 0.68 0.708972
Target:  5'- cUCUUCcGGACGCUgGUGCGCcGCUu- -3'
miRNA:   3'- -AGGAGuUCUGCGAgUACGCGcCGGcc -5'
25509 5' -57.5 NC_005337.1 + 35427 0.68 0.718855
Target:  5'- -gCUCGauGGACGCgCAcgGCGCGGUgGGc -3'
miRNA:   3'- agGAGU--UCUGCGaGUa-CGCGCCGgCC- -5'
25509 5' -57.5 NC_005337.1 + 102995 0.68 0.718855
Target:  5'- cCCUC-GGACGUgccCGaGCGCGGCCc- -3'
miRNA:   3'- aGGAGuUCUGCGa--GUaCGCGCCGGcc -5'
25509 5' -57.5 NC_005337.1 + 19996 0.68 0.718855
Target:  5'- gUCCUC-GGGCaGCaCGUGCuGCGGgCGGa -3'
miRNA:   3'- -AGGAGuUCUG-CGaGUACG-CGCCgGCC- -5'
25509 5' -57.5 NC_005337.1 + 70789 0.68 0.718855
Target:  5'- -aCUC-GGAgGC-CAUGCgGCGGCUGGu -3'
miRNA:   3'- agGAGuUCUgCGaGUACG-CGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 122198 0.68 0.737423
Target:  5'- gCCUCAucgccgcGGGCGCggacgugUcgGCGCGcacGCCGGa -3'
miRNA:   3'- aGGAGU-------UCUGCGa------GuaCGCGC---CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.