miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25509 5' -57.5 NC_005337.1 + 129876 0.68 0.748029
Target:  5'- cCCUCGAuacggcaucucGcCGCUgcaCAUG-GCGGCCGGg -3'
miRNA:   3'- aGGAGUU-----------CuGCGA---GUACgCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 36113 0.68 0.718855
Target:  5'- uUCaUCAAGuGCGCaggcacccugUCGUGCGCGGCgugCGGg -3'
miRNA:   3'- -AGgAGUUC-UGCG----------AGUACGCGCCG---GCC- -5'
25509 5' -57.5 NC_005337.1 + 130729 0.68 0.728664
Target:  5'- cUCgUCGAG-CGCUCGUG-GCcGCUGGg -3'
miRNA:   3'- -AGgAGUUCuGCGAGUACgCGcCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 93636 0.68 0.738392
Target:  5'- gUCUUCAuGAaGUUCAgcaaGuCGCGGCCGGc -3'
miRNA:   3'- -AGGAGUuCUgCGAGUa---C-GCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 28873 0.68 0.738392
Target:  5'- gUCCaaCAAGACGgaCGUGCagacgugcaacCGGCCGGg -3'
miRNA:   3'- -AGGa-GUUCUGCgaGUACGc----------GCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 49170 0.68 0.748029
Target:  5'- gCgUCAagaacgugcAGACGCUCGUGCgguacGUGGCCa- -3'
miRNA:   3'- aGgAGU---------UCUGCGAGUACG-----CGCCGGcc -5'
25509 5' -57.5 NC_005337.1 + 120601 0.68 0.757565
Target:  5'- gCCUC---GCGCUCAUG-GaggaGGCCGGc -3'
miRNA:   3'- aGGAGuucUGCGAGUACgCg---CCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 132103 0.67 0.79453
Target:  5'- gCCgugcgCGucGGCGC-CGUGCGCGGCaGGc -3'
miRNA:   3'- aGGa----GUu-CUGCGaGUACGCGCCGgCC- -5'
25509 5' -57.5 NC_005337.1 + 22832 0.67 0.79453
Target:  5'- uUCCUCAccgaGGAcgaccCGCUCGUGCuggaccGCGGCgCGc -3'
miRNA:   3'- -AGGAGU----UCU-----GCGAGUACG------CGCCG-GCc -5'
25509 5' -57.5 NC_005337.1 + 17556 0.67 0.803432
Target:  5'- gUCCaCGAGGucggagUGCUUGUGCcgcgccauuGCGGCCGGc -3'
miRNA:   3'- -AGGaGUUCU------GCGAGUACG---------CGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 44703 0.67 0.785484
Target:  5'- uUCCgguGGuguGCUCGacGUGCGGCCGGg -3'
miRNA:   3'- -AGGaguUCug-CGAGUa-CGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 23043 0.67 0.785484
Target:  5'- gUCCUCGuucguGACGCaCGccGCGCG-CCGGa -3'
miRNA:   3'- -AGGAGUu----CUGCGaGUa-CGCGCcGGCC- -5'
25509 5' -57.5 NC_005337.1 + 99697 0.67 0.803432
Target:  5'- gCUUCGAcGCGCUgc-GCGCGGCCa- -3'
miRNA:   3'- aGGAGUUcUGCGAguaCGCGCCGGcc -5'
25509 5' -57.5 NC_005337.1 + 43877 0.67 0.804314
Target:  5'- -gCgu-GGACGCggagauggugaugugCAcGCGCGGCCGGa -3'
miRNA:   3'- agGaguUCUGCGa--------------GUaCGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 44464 0.67 0.785484
Target:  5'- gCCUCGccgagcuggAGGCcaGUUCGagGCGCGGCCGc -3'
miRNA:   3'- aGGAGU---------UCUG--CGAGUa-CGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 43154 0.67 0.766992
Target:  5'- -gCUCuccAUGCUCAUGCGCGccgaCCGGa -3'
miRNA:   3'- agGAGuucUGCGAGUACGCGCc---GGCC- -5'
25509 5' -57.5 NC_005337.1 + 2865 0.67 0.785484
Target:  5'- gCCgaucGGCGcCUCAccaGCGUGGCCGGc -3'
miRNA:   3'- aGGaguuCUGC-GAGUa--CGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 3363 0.67 0.776301
Target:  5'- aCCgcuugCAGGAgGU--GUGCGCGGCCa- -3'
miRNA:   3'- aGGa----GUUCUgCGagUACGCGCCGGcc -5'
25509 5' -57.5 NC_005337.1 + 64894 0.67 0.776301
Target:  5'- gCCUCAcagAGGCGgaCcugGCGCuagcGGCCGGc -3'
miRNA:   3'- aGGAGU---UCUGCgaGua-CGCG----CCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 85379 0.67 0.785484
Target:  5'- gUCCgagaugCAcuGGAUGC-CGUGCGCGGCg-- -3'
miRNA:   3'- -AGGa-----GU--UCUGCGaGUACGCGCCGgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.