Results 81 - 100 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 99697 | 0.67 | 0.803432 |
Target: 5'- gCUUCGAcGCGCUgc-GCGCGGCCa- -3' miRNA: 3'- aGGAGUUcUGCGAguaCGCGCCGGcc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 35388 | 0.67 | 0.803432 |
Target: 5'- -gCUCGAGcGCGCaguccgCGcGCGCGGCgCGGu -3' miRNA: 3'- agGAGUUC-UGCGa-----GUaCGCGCCG-GCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 103992 | 0.67 | 0.803432 |
Target: 5'- gCCgUCcuGGCGCUCAccUGCGC-GCCGu -3' miRNA: 3'- aGG-AGuuCUGCGAGU--ACGCGcCGGCc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 38973 | 0.67 | 0.803432 |
Target: 5'- gCC-CGAG-UGCgCGUGCGUcaccGGCCGGg -3' miRNA: 3'- aGGaGUUCuGCGaGUACGCG----CCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 73301 | 0.67 | 0.798108 |
Target: 5'- uUCUUCGAGucccagcgcgugggcGCGCgcccCAUGCGCauGCCGGc -3' miRNA: 3'- -AGGAGUUC---------------UGCGa---GUACGCGc-CGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 94554 | 0.67 | 0.79453 |
Target: 5'- cUCCgagUCGAuGCGCUUGauggGCGCGGCCa- -3' miRNA: 3'- -AGG---AGUUcUGCGAGUa---CGCGCCGGcc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 113615 | 0.67 | 0.776301 |
Target: 5'- cCCUCuGGuccGCGC-CGUGCGaGGCCGa -3' miRNA: 3'- aGGAGuUC---UGCGaGUACGCgCCGGCc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 126919 | 0.67 | 0.766992 |
Target: 5'- aUCgUCGAGACGCUgCuggagGCG-GGCgCGGa -3' miRNA: 3'- -AGgAGUUCUGCGA-Gua---CGCgCCG-GCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 43877 | 0.67 | 0.804314 |
Target: 5'- -gCgu-GGACGCggagauggugaugugCAcGCGCGGCCGGa -3' miRNA: 3'- agGaguUCUGCGa--------------GUaCGCGCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 130783 | 0.66 | 0.853361 |
Target: 5'- aCCU--GGGCGCcgCcgGUGCGGCUGc -3' miRNA: 3'- aGGAguUCUGCGa-GuaCGCGCCGGCc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 37889 | 0.66 | 0.853361 |
Target: 5'- gUCCUCcgccgccUGCUCggGCGCGaCCGGg -3' miRNA: 3'- -AGGAGuucu---GCGAGuaCGCGCcGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 101563 | 0.66 | 0.853361 |
Target: 5'- uUCCUCAAGGagcUGCUCGUGaGCGGa--- -3' miRNA: 3'- -AGGAGUUCU---GCGAGUACgCGCCggcc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 103858 | 0.66 | 0.845492 |
Target: 5'- aUCCUCAAGcgGCaGUUCGcggaGCGCGGCgGc -3' miRNA: 3'- -AGGAGUUC--UG-CGAGUa---CGCGCCGgCc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 45040 | 0.66 | 0.837433 |
Target: 5'- gCCgCAcGAUGCUCcgcaagcuggGCGcCGGCCGGc -3' miRNA: 3'- aGGaGUuCUGCGAGua--------CGC-GCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 38860 | 0.66 | 0.845492 |
Target: 5'- cCCgCGuGACGCUCGUGCG-GGCg-- -3' miRNA: 3'- aGGaGUuCUGCGAGUACGCgCCGgcc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 80478 | 0.66 | 0.845492 |
Target: 5'- aCUUCGGGAgcaCGUacUCgAUGCgccccGCGGCCGGg -3' miRNA: 3'- aGGAGUUCU---GCG--AG-UACG-----CGCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 1873 | 0.66 | 0.837433 |
Target: 5'- cUCCUCgAAGAuCGCgg--GcCGgGGCCGGu -3' miRNA: 3'- -AGGAG-UUCU-GCGaguaC-GCgCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 71264 | 0.66 | 0.837433 |
Target: 5'- gUCgaCAAcGCGCUCAUGCGCcgcguggcGCUGGu -3' miRNA: 3'- -AGgaGUUcUGCGAGUACGCGc-------CGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 86172 | 0.66 | 0.829189 |
Target: 5'- gUCUUCAcGaaGCGCUCcgGCGCGuCCGu -3' miRNA: 3'- -AGGAGUuC--UGCGAGuaCGCGCcGGCc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 51518 | 0.66 | 0.853361 |
Target: 5'- aUCaUCAuGGCGCUCuucgGCGUGcggcuGCCGGg -3' miRNA: 3'- -AGgAGUuCUGCGAGua--CGCGC-----CGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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