miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25509 5' -57.5 NC_005337.1 + 71264 0.66 0.837433
Target:  5'- gUCgaCAAcGCGCUCAUGCGCcgcguggcGCUGGu -3'
miRNA:   3'- -AGgaGUUcUGCGAGUACGCGc-------CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 73301 0.67 0.798108
Target:  5'- uUCUUCGAGucccagcgcgugggcGCGCgcccCAUGCGCauGCCGGc -3'
miRNA:   3'- -AGGAGUUC---------------UGCGa---GUACGCGc-CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 74902 0.68 0.748029
Target:  5'- gCCg-GGGGCGUgaugGCGCGGCUGGc -3'
miRNA:   3'- aGGagUUCUGCGaguaCGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 76222 0.66 0.828355
Target:  5'- gUCCUCGGGGuuggcgagcacgcCGC-CGUcgaagaGCGCGGCCuGGc -3'
miRNA:   3'- -AGGAGUUCU-------------GCGaGUA------CGCGCCGG-CC- -5'
25509 5' -57.5 NC_005337.1 + 77969 0.66 0.812181
Target:  5'- cUCCUgCGAGAU-CUCGaGCaGCGGCCGc -3'
miRNA:   3'- -AGGA-GUUCUGcGAGUaCG-CGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 78616 0.7 0.607022
Target:  5'- gUCCUUgccgcggGAGACGUUCGaggugaGCGCGGUgGGg -3'
miRNA:   3'- -AGGAG-------UUCUGCGAGUa-----CGCGCCGgCC- -5'
25509 5' -57.5 NC_005337.1 + 80478 0.66 0.845492
Target:  5'- aCUUCGGGAgcaCGUacUCgAUGCgccccGCGGCCGGg -3'
miRNA:   3'- aGGAGUUCU---GCG--AG-UACG-----CGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 82600 0.66 0.853361
Target:  5'- gCCUCGccguAGGCGUcCAgggGCGaCGGCgGGc -3'
miRNA:   3'- aGGAGU----UCUGCGaGUa--CGC-GCCGgCC- -5'
25509 5' -57.5 NC_005337.1 + 83962 0.69 0.658771
Target:  5'- gUCCgcgCAGGGCaGCggcgGCGCGGgCGGg -3'
miRNA:   3'- -AGGa--GUUCUG-CGaguaCGCGCCgGCC- -5'
25509 5' -57.5 NC_005337.1 + 85379 0.67 0.785484
Target:  5'- gUCCgagaugCAcuGGAUGC-CGUGCGCGGCg-- -3'
miRNA:   3'- -AGGa-----GU--UCUGCGaGUACGCGCCGgcc -5'
25509 5' -57.5 NC_005337.1 + 86172 0.66 0.829189
Target:  5'- gUCUUCAcGaaGCGCUCcgGCGCGuCCGu -3'
miRNA:   3'- -AGGAGUuC--UGCGAGuaCGCGCcGGCc -5'
25509 5' -57.5 NC_005337.1 + 86507 0.7 0.597911
Target:  5'- cCCUCgAAGuACGCguugGCGCGGCgGGc -3'
miRNA:   3'- aGGAG-UUC-UGCGaguaCGCGCCGgCC- -5'
25509 5' -57.5 NC_005337.1 + 86650 0.66 0.845492
Target:  5'- cUCCgggaacGugGCUUucaGCGCGGCCGc -3'
miRNA:   3'- -AGGaguu--CugCGAGua-CGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 88554 0.68 0.738392
Target:  5'- aUCCUCAucgccACGCUg--GCG-GGCCGGg -3'
miRNA:   3'- -AGGAGUuc---UGCGAguaCGCgCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 89856 0.66 0.812181
Target:  5'- gCCUCGAGcUGCUUcuccgaGCGCGcGCUGGc -3'
miRNA:   3'- aGGAGUUCuGCGAGua----CGCGC-CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 89932 0.69 0.668887
Target:  5'- cUCCUCAcagaGGGcCGCgCGgauaaagGCGCGGCCGc -3'
miRNA:   3'- -AGGAGU----UCU-GCGaGUa------CGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 91533 0.68 0.718855
Target:  5'- aCCcgCAccgcACGCUCG-GCGCGGCCGu -3'
miRNA:   3'- aGGa-GUuc--UGCGAGUaCGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 93636 0.68 0.738392
Target:  5'- gUCUUCAuGAaGUUCAgcaaGuCGCGGCCGGc -3'
miRNA:   3'- -AGGAGUuCUgCGAGUa---C-GCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 93864 0.66 0.82077
Target:  5'- gCCUgCAcGA-GCUCAUGUggcggaugaaGCGGCUGGg -3'
miRNA:   3'- aGGA-GUuCUgCGAGUACG----------CGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 94026 0.71 0.547797
Target:  5'- gUCUCGugguGGCGCggCGcgGCGCGGCCGa -3'
miRNA:   3'- aGGAGUu---CUGCGa-GUa-CGCGCCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.