miRNA display CGI


Results 101 - 120 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25509 5' -57.5 NC_005337.1 + 103858 0.66 0.845492
Target:  5'- aUCCUCAAGcgGCaGUUCGcggaGCGCGGCgGc -3'
miRNA:   3'- -AGGAGUUC--UG-CGAGUa---CGCGCCGgCc -5'
25509 5' -57.5 NC_005337.1 + 101563 0.66 0.853361
Target:  5'- uUCCUCAAGGagcUGCUCGUGaGCGGa--- -3'
miRNA:   3'- -AGGAGUUCU---GCGAGUACgCGCCggcc -5'
25509 5' -57.5 NC_005337.1 + 37889 0.66 0.853361
Target:  5'- gUCCUCcgccgccUGCUCggGCGCGaCCGGg -3'
miRNA:   3'- -AGGAGuucu---GCGAGuaCGCGCcGGCC- -5'
25509 5' -57.5 NC_005337.1 + 120558 0.66 0.853361
Target:  5'- gUCCUCGcGGA-GCUCggugGUGUGCGGCaaccCGGc -3'
miRNA:   3'- -AGGAGU-UCUgCGAG----UACGCGCCG----GCC- -5'
25509 5' -57.5 NC_005337.1 + 519 0.66 0.82077
Target:  5'- cUCCUCGcggcgcAGGCGCUCca--GCuGCCGGc -3'
miRNA:   3'- -AGGAGU------UCUGCGAGuacgCGcCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 68224 0.66 0.82077
Target:  5'- gCCUgAcGGCGUcCGgguuccggaGCGCGGCCGGc -3'
miRNA:   3'- aGGAgUuCUGCGaGUa--------CGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 2865 0.67 0.785484
Target:  5'- gCCgaucGGCGcCUCAccaGCGUGGCCGGc -3'
miRNA:   3'- aGGaguuCUGC-GAGUa--CGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 44464 0.67 0.785484
Target:  5'- gCCUCGccgagcuggAGGCcaGUUCGagGCGCGGCCGc -3'
miRNA:   3'- aGGAGU---------UCUG--CGAGUa-CGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 85379 0.67 0.785484
Target:  5'- gUCCgagaugCAcuGGAUGC-CGUGCGCGGCg-- -3'
miRNA:   3'- -AGGa-----GU--UCUGCGaGUACGCGCCGgcc -5'
25509 5' -57.5 NC_005337.1 + 23043 0.67 0.785484
Target:  5'- gUCCUCGuucguGACGCaCGccGCGCG-CCGGa -3'
miRNA:   3'- -AGGAGUu----CUGCGaGUa-CGCGCcGGCC- -5'
25509 5' -57.5 NC_005337.1 + 44703 0.67 0.785484
Target:  5'- uUCCgguGGuguGCUCGacGUGCGGCCGGg -3'
miRNA:   3'- -AGGaguUCug-CGAGUa-CGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 22832 0.67 0.79453
Target:  5'- uUCCUCAccgaGGAcgaccCGCUCGUGCuggaccGCGGCgCGc -3'
miRNA:   3'- -AGGAGU----UCU-----GCGAGUACG------CGCCG-GCc -5'
25509 5' -57.5 NC_005337.1 + 132103 0.67 0.79453
Target:  5'- gCCgugcgCGucGGCGC-CGUGCGCGGCaGGc -3'
miRNA:   3'- aGGa----GUu-CUGCGaGUACGCGCCGgCC- -5'
25509 5' -57.5 NC_005337.1 + 99697 0.67 0.803432
Target:  5'- gCUUCGAcGCGCUgc-GCGCGGCCa- -3'
miRNA:   3'- aGGAGUUcUGCGAguaCGCGCCGGcc -5'
25509 5' -57.5 NC_005337.1 + 17556 0.67 0.803432
Target:  5'- gUCCaCGAGGucggagUGCUUGUGCcgcgccauuGCGGCCGGc -3'
miRNA:   3'- -AGGaGUUCU------GCGAGUACG---------CGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 43877 0.67 0.804314
Target:  5'- -gCgu-GGACGCggagauggugaugugCAcGCGCGGCCGGa -3'
miRNA:   3'- agGaguUCUGCGa--------------GUaCGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 42958 0.66 0.812181
Target:  5'- gCCUCAgggaGGACGaggacgGCGCGGCgaCGGg -3'
miRNA:   3'- aGGAGU----UCUGCgagua-CGCGCCG--GCC- -5'
25509 5' -57.5 NC_005337.1 + 89856 0.66 0.812181
Target:  5'- gCCUCGAGcUGCUUcuccgaGCGCGcGCUGGc -3'
miRNA:   3'- aGGAGUUCuGCGAGua----CGCGC-CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 77969 0.66 0.812181
Target:  5'- cUCCUgCGAGAU-CUCGaGCaGCGGCCGc -3'
miRNA:   3'- -AGGA-GUUCUGcGAGUaCG-CGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 130783 0.66 0.853361
Target:  5'- aCCU--GGGCGCcgCcgGUGCGGCUGc -3'
miRNA:   3'- aGGAguUCUGCGa-GuaCGCGCCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.