miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 5' -53.2 NC_005337.1 + 54515 0.68 0.902059
Target:  5'- gGGGCCuccgacGggUCCAU-AUGCcGCACGu -3'
miRNA:   3'- -CCCGGuuc---CuuAGGUAgUACG-CGUGC- -5'
25510 5' -53.2 NC_005337.1 + 98037 0.68 0.895432
Target:  5'- cGGGCUggGGuucGUCCGgga-GCGCGCc -3'
miRNA:   3'- -CCCGGuuCCu--UAGGUaguaCGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 76095 0.68 0.895432
Target:  5'- cGGUCAu---GUCCAcguacaUCAUGCGCACGc -3'
miRNA:   3'- cCCGGUuccuUAGGU------AGUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 67318 0.68 0.895432
Target:  5'- uGGCCGAGGA--CCAggUCAUGgUGUACa -3'
miRNA:   3'- cCCGGUUCCUuaGGU--AGUAC-GCGUGc -5'
25510 5' -53.2 NC_005337.1 + 42094 0.68 0.895432
Target:  5'- cGGUCAcgcgcucguuccGGGAGUCCAUCGagacgaggacgGCGCugGc -3'
miRNA:   3'- cCCGGU------------UCCUUAGGUAGUa----------CGCGugC- -5'
25510 5' -53.2 NC_005337.1 + 20983 0.68 0.888563
Target:  5'- cGGGUCu-GGA--UCAUCAUGgGCAUGg -3'
miRNA:   3'- -CCCGGuuCCUuaGGUAGUACgCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 85885 0.69 0.881456
Target:  5'- cGGGCaCAcGGAGcccUCCAgCAUGgGCACc -3'
miRNA:   3'- -CCCG-GUuCCUU---AGGUaGUACgCGUGc -5'
25510 5' -53.2 NC_005337.1 + 115497 0.69 0.874114
Target:  5'- gGGGCCGuggacgucAGGugcgcccucgAGUCCAUCGUGUacgGCAUGu -3'
miRNA:   3'- -CCCGGU--------UCC----------UUAGGUAGUACG---CGUGC- -5'
25510 5' -53.2 NC_005337.1 + 40004 0.69 0.874114
Target:  5'- aGGCCAcGGAggCCAUC---CGCGCGg -3'
miRNA:   3'- cCCGGUuCCUuaGGUAGuacGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 33975 0.72 0.710294
Target:  5'- cGGCCAGGG---CCAggaagGUGCGCACGg -3'
miRNA:   3'- cCCGGUUCCuuaGGUag---UACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 11406 0.72 0.730658
Target:  5'- aGGGCCccGGGuUCCG-CAgGCGCGCGg -3'
miRNA:   3'- -CCCGGuuCCUuAGGUaGUaCGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 130744 0.72 0.730658
Target:  5'- uGGCCGcuGggUCCGaCGUGUGCACc -3'
miRNA:   3'- cCCGGUucCuuAGGUaGUACGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 41615 0.7 0.807717
Target:  5'- uGGCgAAGGAggCCGUgGUGCGaCGCc -3'
miRNA:   3'- cCCGgUUCCUuaGGUAgUACGC-GUGc -5'
25510 5' -53.2 NC_005337.1 + 102528 0.72 0.700003
Target:  5'- -cGCCAcGGAGUCCAUCuuccUGCGCGa- -3'
miRNA:   3'- ccCGGUuCCUUAGGUAGu---ACGCGUgc -5'
25510 5' -53.2 NC_005337.1 + 124299 0.74 0.637322
Target:  5'- uGGCCGAGGAcgcggccUCCGUCGcgGCGCAgGc -3'
miRNA:   3'- cCCGGUUCCUu------AGGUAGUa-CGCGUgC- -5'
25510 5' -53.2 NC_005337.1 + 103102 0.74 0.637322
Target:  5'- cGGCCGAcaucgaccucccGGAGUgcggCAUCGUGCGCGCGc -3'
miRNA:   3'- cCCGGUU------------CCUUAg---GUAGUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 130520 0.74 0.626808
Target:  5'- aGGUCAuGGAGUUCcUgGUGCGCGCGg -3'
miRNA:   3'- cCCGGUuCCUUAGGuAgUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 23542 0.76 0.483463
Target:  5'- cGGGCCAuGG---CCAUCAUGCGguCGg -3'
miRNA:   3'- -CCCGGUuCCuuaGGUAGUACGCguGC- -5'
25510 5' -53.2 NC_005337.1 + 99041 0.77 0.435963
Target:  5'- aGGGCCAucGAAUCCGUCAcGCuCACGc -3'
miRNA:   3'- -CCCGGUucCUUAGGUAGUaCGcGUGC- -5'
25510 5' -53.2 NC_005337.1 + 107262 0.66 0.965574
Target:  5'- uGGCCGGGGAgcacAUCCGcuUCcgGCuGC-CGg -3'
miRNA:   3'- cCCGGUUCCU----UAGGU--AGuaCG-CGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.