miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 5' -53.2 NC_005337.1 + 407 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 346 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 285 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 224 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 49 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 86500 0.68 0.90844
Target:  5'- uGGCgGAGGAGUCCGagAgcCGCAUGg -3'
miRNA:   3'- cCCGgUUCCUUAGGUagUacGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 163 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 224 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 285 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 346 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 407 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 163 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 102 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 102 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 49 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 54515 0.68 0.902059
Target:  5'- gGGGCCuccgacGggUCCAU-AUGCcGCACGu -3'
miRNA:   3'- -CCCGGuuc---CuuAGGUAgUACG-CGUGC- -5'
25510 5' -53.2 NC_005337.1 + 75622 0.68 0.902059
Target:  5'- -cGCCGAGGAcgcgcgggCCGUCGUGauggGCGCGu -3'
miRNA:   3'- ccCGGUUCCUua------GGUAGUACg---CGUGC- -5'
25510 5' -53.2 NC_005337.1 + 101725 0.68 0.902059
Target:  5'- cGGCuCAAGGAcAUCCucacCGUGCGC-CGc -3'
miRNA:   3'- cCCG-GUUCCU-UAGGua--GUACGCGuGC- -5'
25510 5' -53.2 NC_005337.1 + 98037 0.68 0.895432
Target:  5'- cGGGCUggGGuucGUCCGgga-GCGCGCc -3'
miRNA:   3'- -CCCGGuuCCu--UAGGUaguaCGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 76095 0.68 0.895432
Target:  5'- cGGUCAu---GUCCAcguacaUCAUGCGCACGc -3'
miRNA:   3'- cCCGGUuccuUAGGU------AGUACGCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.