miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25511 3' -55.3 NC_005337.1 + 35113 0.67 0.85124
Target:  5'- cGUCCGCGcGgcgCgGACGCccaGUGCGGCGc -3'
miRNA:   3'- -CAGGCGCuCa--GaCUGCG---CAUGCUGUa -5'
25511 3' -55.3 NC_005337.1 + 109758 0.67 0.866817
Target:  5'- cGUCCGCGAgGUCgucCGCGgugggACGACc- -3'
miRNA:   3'- -CAGGCGCU-CAGacuGCGCa----UGCUGua -5'
25511 3' -55.3 NC_005337.1 + 25309 0.66 0.888543
Target:  5'- -gCCGCGcGUCgaccGGCGCGUguACGACc- -3'
miRNA:   3'- caGGCGCuCAGa---CUGCGCA--UGCUGua -5'
25511 3' -55.3 NC_005337.1 + 107049 0.66 0.888543
Target:  5'- uGUCCGaCGAGgacCUGGCGgCG-GCGGCGc -3'
miRNA:   3'- -CAGGC-GCUCa--GACUGC-GCaUGCUGUa -5'
25511 3' -55.3 NC_005337.1 + 115580 0.66 0.914245
Target:  5'- -gCCGCGuGUCUGAgCGUGUACu---- -3'
miRNA:   3'- caGGCGCuCAGACU-GCGCAUGcugua -5'
25511 3' -55.3 NC_005337.1 + 52573 0.69 0.790685
Target:  5'- cUCCGCGGGgacGGCGCG-GCGGCGc -3'
miRNA:   3'- cAGGCGCUCagaCUGCGCaUGCUGUa -5'
25511 3' -55.3 NC_005337.1 + 104300 0.69 0.771931
Target:  5'- gGUCCGCGAG---GGCGCG-GCGGCGc -3'
miRNA:   3'- -CAGGCGCUCagaCUGCGCaUGCUGUa -5'
25511 3' -55.3 NC_005337.1 + 12358 0.69 0.742862
Target:  5'- cGUCCGCGGacGUCgcGGCGCGUcGCGAUu- -3'
miRNA:   3'- -CAGGCGCU--CAGa-CUGCGCA-UGCUGua -5'
25511 3' -55.3 NC_005337.1 + 46648 0.71 0.661663
Target:  5'- cUCCGCGAGUCggGGCuGCGcGCGAUc- -3'
miRNA:   3'- cAGGCGCUCAGa-CUG-CGCaUGCUGua -5'
25511 3' -55.3 NC_005337.1 + 52985 0.72 0.599459
Target:  5'- -aCCGCGAGaUCaGGCGCGUgcuccuguagcgGCGGCAUg -3'
miRNA:   3'- caGGCGCUC-AGaCUGCGCA------------UGCUGUA- -5'
25511 3' -55.3 NC_005337.1 + 37311 0.72 0.599459
Target:  5'- -gCCGCGAGgagCUGGuCGCGcGCGGCGa -3'
miRNA:   3'- caGGCGCUCa--GACU-GCGCaUGCUGUa -5'
25511 3' -55.3 NC_005337.1 + 131216 0.76 0.405702
Target:  5'- aGUCCGCGcuagccgccGGUgUGugGCGUACGugGUc -3'
miRNA:   3'- -CAGGCGC---------UCAgACugCGCAUGCugUA- -5'
25511 3' -55.3 NC_005337.1 + 77779 0.79 0.275381
Target:  5'- gGUCCGCgGAGUUgggGAgCGCGUACGGCAg -3'
miRNA:   3'- -CAGGCG-CUCAGa--CU-GCGCAUGCUGUa -5'
25511 3' -55.3 NC_005337.1 + 127176 1.06 0.004288
Target:  5'- cGUCCGCGAGUCUGACGCGUACGACAUg -3'
miRNA:   3'- -CAGGCGCUCAGACUGCGCAUGCUGUA- -5'
25511 3' -55.3 NC_005337.1 + 36348 0.66 0.920066
Target:  5'- cGUCCGCGcGUCcGAgUGCGacucGCGACAc -3'
miRNA:   3'- -CAGGCGCuCAGaCU-GCGCa---UGCUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.