miRNA display CGI


Results 21 - 40 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25511 5' -59 NC_005337.1 + 133546 0.66 0.790044
Target:  5'- cGCGC-UCU-CGCcCGCGuACCCCGCgGc -3'
miRNA:   3'- -CGUGcAGAuGCGcGCGU-UGGGGCGgC- -5'
25511 5' -59 NC_005337.1 + 41852 0.66 0.790044
Target:  5'- aGCACGUgCUcgagcAgGUGCGCgAGCCCCaGCaCGu -3'
miRNA:   3'- -CGUGCA-GA-----UgCGCGCG-UUGGGG-CG-GC- -5'
25511 5' -59 NC_005337.1 + 21664 0.66 0.790044
Target:  5'- gGCACGUgCU-CGCGCuGCAcuACCUgGUCa -3'
miRNA:   3'- -CGUGCA-GAuGCGCG-CGU--UGGGgCGGc -5'
25511 5' -59 NC_005337.1 + 50209 0.66 0.790044
Target:  5'- cGCGCGUCUGCacaCGgGgAACCCCacaGCUu -3'
miRNA:   3'- -CGUGCAGAUGc--GCgCgUUGGGG---CGGc -5'
25511 5' -59 NC_005337.1 + 110265 0.66 0.790044
Target:  5'- aGCAUGUgUAUGaGCGCggUCUCGuuGa -3'
miRNA:   3'- -CGUGCAgAUGCgCGCGuuGGGGCggC- -5'
25511 5' -59 NC_005337.1 + 98950 0.66 0.790044
Target:  5'- cGCACGcCUGgGUcCGCGGCgCCGUCu -3'
miRNA:   3'- -CGUGCaGAUgCGcGCGUUGgGGCGGc -5'
25511 5' -59 NC_005337.1 + 133546 0.66 0.790044
Target:  5'- cGCGC-UCU-CGCcCGCGuACCCCGCgGc -3'
miRNA:   3'- -CGUGcAGAuGCGcGCGU-UGGGGCGgC- -5'
25511 5' -59 NC_005337.1 + 34050 0.66 0.790044
Target:  5'- cCGCGaUC-ACGCGCacGCGGCgCCgGCCGu -3'
miRNA:   3'- cGUGC-AGaUGCGCG--CGUUG-GGgCGGC- -5'
25511 5' -59 NC_005337.1 + 95625 0.66 0.790044
Target:  5'- -gGCGUCcgUGgGCGCGGgCCCGCUc -3'
miRNA:   3'- cgUGCAGauGCgCGCGUUgGGGCGGc -5'
25511 5' -59 NC_005337.1 + 65915 0.66 0.790044
Target:  5'- uCGC-UCcACGCGauCGCGACCgCGCCGu -3'
miRNA:   3'- cGUGcAGaUGCGC--GCGUUGGgGCGGC- -5'
25511 5' -59 NC_005337.1 + 3290 0.66 0.789151
Target:  5'- aGCgGCGUCgugucguaGCGCGCGUugcgcacguccacGGCCaCGCCGg -3'
miRNA:   3'- -CG-UGCAGa-------UGCGCGCG-------------UUGGgGCGGC- -5'
25511 5' -59 NC_005337.1 + 11995 0.66 0.787361
Target:  5'- aGCGCGgcggUCaGCGCGCGCAugUUuuuucgcaugaucaUGCCGg -3'
miRNA:   3'- -CGUGC----AGaUGCGCGCGUugGG--------------GCGGC- -5'
25511 5' -59 NC_005337.1 + 59082 0.66 0.787361
Target:  5'- cGCugGUCUcgcggcccgcggACGCGCGCGAggcgacgagggcggUCCgGCUc -3'
miRNA:   3'- -CGugCAGA------------UGCGCGCGUU--------------GGGgCGGc -5'
25511 5' -59 NC_005337.1 + 57854 0.66 0.784667
Target:  5'- cCAUGUCgcugaccaaggaggACGgGCGCcacGCCCCGCgCGc -3'
miRNA:   3'- cGUGCAGa-------------UGCgCGCGu--UGGGGCG-GC- -5'
25511 5' -59 NC_005337.1 + 131416 0.66 0.781055
Target:  5'- --cCG-CUG-GCGCGCGGCUCCGCgGa -3'
miRNA:   3'- cguGCaGAUgCGCGCGUUGGGGCGgC- -5'
25511 5' -59 NC_005337.1 + 108922 0.66 0.781055
Target:  5'- aGCGCcacuUCUucCGCGCGUcgaaGACCUCGUCGu -3'
miRNA:   3'- -CGUGc---AGAu-GCGCGCG----UUGGGGCGGC- -5'
25511 5' -59 NC_005337.1 + 110352 0.66 0.781055
Target:  5'- cGCGCGcCUGCcgcggGCGCGCGGgCgCGCgGc -3'
miRNA:   3'- -CGUGCaGAUG-----CGCGCGUUgGgGCGgC- -5'
25511 5' -59 NC_005337.1 + 52785 0.66 0.781055
Target:  5'- aCGCGUCguggUACGC-CGCGuACUCCGUCa -3'
miRNA:   3'- cGUGCAG----AUGCGcGCGU-UGGGGCGGc -5'
25511 5' -59 NC_005337.1 + 21409 0.66 0.781055
Target:  5'- aGCgACGUCaugaaGCGCGCGCuugGCCCCa--- -3'
miRNA:   3'- -CG-UGCAGa----UGCGCGCGu--UGGGGcggc -5'
25511 5' -59 NC_005337.1 + 65753 0.66 0.781055
Target:  5'- gGCACG-CUcagagccgaGCGCGgGCGcACCCacgGCCGc -3'
miRNA:   3'- -CGUGCaGA---------UGCGCgCGU-UGGGg--CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.