miRNA display CGI


Results 21 - 40 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25512 3' -59 NC_005337.1 + 53021 0.66 0.81094
Target:  5'- cGGCuGCGGcuCGUG-ACGCugaGCGACGc -3'
miRNA:   3'- -CCG-CGCCu-GCACuUGCGcg-CGCUGCa -5'
25512 3' -59 NC_005337.1 + 44654 0.66 0.81094
Target:  5'- cGCaGCGGGCGcu-ACGUGgGCGACu- -3'
miRNA:   3'- cCG-CGCCUGCacuUGCGCgCGCUGca -5'
25512 3' -59 NC_005337.1 + 44938 0.66 0.81094
Target:  5'- cGCGCGGAucgcucaucuuCGUGuccAGCGcCGCGuCGAUGa -3'
miRNA:   3'- cCGCGCCU-----------GCAC---UUGC-GCGC-GCUGCa -5'
25512 3' -59 NC_005337.1 + 111226 0.66 0.810087
Target:  5'- cGGCGCGcGGCGUgcgucacGAACGaggacacguccuCGaCGCGGCGc -3'
miRNA:   3'- -CCGCGC-CUGCA-------CUUGC------------GC-GCGCUGCa -5'
25512 3' -59 NC_005337.1 + 70065 0.66 0.802338
Target:  5'- cGuCGCGGAcCGcGAAcuCGUGCGCGACc- -3'
miRNA:   3'- cC-GCGCCU-GCaCUU--GCGCGCGCUGca -5'
25512 3' -59 NC_005337.1 + 36122 0.66 0.802338
Target:  5'- uGCGCaGGCacccUGu-CGUGCGCGGCGUg -3'
miRNA:   3'- cCGCGcCUGc---ACuuGCGCGCGCUGCA- -5'
25512 3' -59 NC_005337.1 + 131395 0.66 0.802338
Target:  5'- cGCGgGGcCGUGAucguguucccGCugGCGCGCGGCu- -3'
miRNA:   3'- cCGCgCCuGCACU----------UG--CGCGCGCUGca -5'
25512 3' -59 NC_005337.1 + 2216 0.66 0.802338
Target:  5'- nGGCcCGGGcCGcGAGCGCGCGCa---- -3'
miRNA:   3'- -CCGcGCCU-GCaCUUGCGCGCGcugca -5'
25512 3' -59 NC_005337.1 + 45900 0.66 0.802338
Target:  5'- cGGUGCGGgacauGCGcuUGuuGCGCGCGaagaaGACGg -3'
miRNA:   3'- -CCGCGCC-----UGC--ACu-UGCGCGCg----CUGCa -5'
25512 3' -59 NC_005337.1 + 81469 0.66 0.802338
Target:  5'- cGGgGCGGgucuaGCGUGAcggaGUaCGCGGCGUa -3'
miRNA:   3'- -CCgCGCC-----UGCACUug--CGcGCGCUGCA- -5'
25512 3' -59 NC_005337.1 + 90314 0.66 0.802338
Target:  5'- gGGCGCGccgcCGUaGAugGUGCGCGGg-- -3'
miRNA:   3'- -CCGCGCcu--GCA-CUugCGCGCGCUgca -5'
25512 3' -59 NC_005337.1 + 50310 0.66 0.802338
Target:  5'- ---cCGG-CGUGAACGC-CGUGACGUu -3'
miRNA:   3'- ccgcGCCuGCACUUGCGcGCGCUGCA- -5'
25512 3' -59 NC_005337.1 + 51762 0.66 0.802338
Target:  5'- uGGCGCuGGACGgccgccccGugGCGUuccccggguGCGACGg -3'
miRNA:   3'- -CCGCG-CCUGCac------UugCGCG---------CGCUGCa -5'
25512 3' -59 NC_005337.1 + 119850 0.66 0.802338
Target:  5'- cGGCGCcagcGGCG-GcACGuCGCGCGGCa- -3'
miRNA:   3'- -CCGCGc---CUGCaCuUGC-GCGCGCUGca -5'
25512 3' -59 NC_005337.1 + 110966 0.66 0.802338
Target:  5'- uGCGCGGccGCGUcGAcguCGUGCGUguuGACGUc -3'
miRNA:   3'- cCGCGCC--UGCA-CUu--GCGCGCG---CUGCA- -5'
25512 3' -59 NC_005337.1 + 66288 0.66 0.80147
Target:  5'- uGGCGCacgcgccgacccuGGaccGCGUGAGCGC-CGCGgucGCGg -3'
miRNA:   3'- -CCGCG-------------CC---UGCACUUGCGcGCGC---UGCa -5'
25512 3' -59 NC_005337.1 + 3073 0.66 0.79359
Target:  5'- aGCGCGGACuc---CGCGCaccucgGCGACGg -3'
miRNA:   3'- cCGCGCCUGcacuuGCGCG------CGCUGCa -5'
25512 3' -59 NC_005337.1 + 109509 0.66 0.79359
Target:  5'- uGGUGaucaGGAagGUGAGCcgccCGCGCGGCGc -3'
miRNA:   3'- -CCGCg---CCUg-CACUUGc---GCGCGCUGCa -5'
25512 3' -59 NC_005337.1 + 91527 0.66 0.79359
Target:  5'- gGGCGCGagaGGCGUcGGucagcaGCGCGCG-GAUGUu -3'
miRNA:   3'- -CCGCGC---CUGCA-CU------UGCGCGCgCUGCA- -5'
25512 3' -59 NC_005337.1 + 40021 0.66 0.79359
Target:  5'- cGCGCGGugGaGAugcuaGCGgGCGuCGUc -3'
miRNA:   3'- cCGCGCCugCaCUug---CGCgCGCuGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.