miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25512 5' -55.8 NC_005337.1 + 125255 0.74 0.458293
Target:  5'- uACACGCCACUGCACguacucaugcGCUGCagccCCGGc -3'
miRNA:   3'- -UGUGCGGUGACGUGa---------CGAUGca--GGUC- -5'
25512 5' -55.8 NC_005337.1 + 68207 0.75 0.385719
Target:  5'- -gGCGCCGCUGCGggcccgcCUGacgGCGUCCGGg -3'
miRNA:   3'- ugUGCGGUGACGU-------GACga-UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 32327 0.75 0.378135
Target:  5'- gGCAgGCCACgugcggGCGCaGCU-CGUCCAGg -3'
miRNA:   3'- -UGUgCGGUGa-----CGUGaCGAuGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 77123 0.77 0.300798
Target:  5'- cACGCGCCggguGCUGCGCUcCacgGCGUCCAGg -3'
miRNA:   3'- -UGUGCGG----UGACGUGAcGa--UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 97169 0.77 0.293773
Target:  5'- -gGCGCCucgGCGCUGCUGCGcUCCGGc -3'
miRNA:   3'- ugUGCGGugaCGUGACGAUGC-AGGUC- -5'
25512 5' -55.8 NC_005337.1 + 125980 0.71 0.628275
Target:  5'- aACGCGCgGCUGCagaccccGCUGC-ACGUCgCGGc -3'
miRNA:   3'- -UGUGCGgUGACG-------UGACGaUGCAG-GUC- -5'
25512 5' -55.8 NC_005337.1 + 3317 0.7 0.639741
Target:  5'- cGCACGuCCACgGcCAC-GCcgGCGUCCAGg -3'
miRNA:   3'- -UGUGC-GGUGaC-GUGaCGa-UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 130788 0.68 0.780862
Target:  5'- gGCGcCGCCGgUGCgGCUGCUGCGcuucUUCGGc -3'
miRNA:   3'- -UGU-GCGGUgACG-UGACGAUGC----AGGUC- -5'
25512 5' -55.8 NC_005337.1 + 47966 0.68 0.780862
Target:  5'- cGCGCGCgAgUGCGgcGCggacGCGUCCAGg -3'
miRNA:   3'- -UGUGCGgUgACGUgaCGa---UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 122149 0.68 0.761745
Target:  5'- cACACGCCGCUGUACUaCgcCG-CCAu -3'
miRNA:   3'- -UGUGCGGUGACGUGAcGauGCaGGUc -5'
25512 5' -55.8 NC_005337.1 + 86388 0.68 0.761745
Target:  5'- aACAUGuCCGCcagGCgGCUGCgcGCGUCCGGc -3'
miRNA:   3'- -UGUGC-GGUGa--CG-UGACGa-UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 37245 0.68 0.752003
Target:  5'- aGCACGuCCACgucGCAgUUGCgguUGUCCAGg -3'
miRNA:   3'- -UGUGC-GGUGa--CGU-GACGau-GCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 29788 0.69 0.7322
Target:  5'- gACuguCGCCGCUGCGCgUGCUccGCGugcUCCGc -3'
miRNA:   3'- -UGu--GCGGUGACGUG-ACGA--UGC---AGGUc -5'
25512 5' -55.8 NC_005337.1 + 128864 0.69 0.7322
Target:  5'- cCACgGCCgaACUGCgcaGCUGCUGCGcacCCAGa -3'
miRNA:   3'- uGUG-CGG--UGACG---UGACGAUGCa--GGUC- -5'
25512 5' -55.8 NC_005337.1 + 110081 0.69 0.722159
Target:  5'- cGCGCGCCucgccgguaACgGCGCgagGCUgcGCGUCCAu -3'
miRNA:   3'- -UGUGCGG---------UGaCGUGa--CGA--UGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 23008 0.69 0.701845
Target:  5'- aGCAUGCUGCgGCACuUGCgccGCGUCgAGg -3'
miRNA:   3'- -UGUGCGGUGaCGUG-ACGa--UGCAGgUC- -5'
25512 5' -55.8 NC_005337.1 + 122044 0.7 0.691592
Target:  5'- aACACGCCGCUGCACaGCcugg-CCAc -3'
miRNA:   3'- -UGUGCGGUGACGUGaCGaugcaGGUc -5'
25512 5' -55.8 NC_005337.1 + 70253 0.7 0.691592
Target:  5'- cUACGCCAC-GCGCUGC-GCGcugugCCGGa -3'
miRNA:   3'- uGUGCGGUGaCGUGACGaUGCa----GGUC- -5'
25512 5' -55.8 NC_005337.1 + 9305 0.7 0.666793
Target:  5'- aGCugGCgGCgaacGCACggacgacagccgaGCUGCGUCCGGa -3'
miRNA:   3'- -UGugCGgUGa---CGUGa------------CGAUGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 18476 0.7 0.660562
Target:  5'- cGCGCGCCAUguccaGCACcg--GCGUCCAGc -3'
miRNA:   3'- -UGUGCGGUGa----CGUGacgaUGCAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.