miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25513 5' -61.5 NC_005337.1 + 68480 0.66 0.633113
Target:  5'- cGC-CGCCgcaccgGGcgCCGcGCUGCUGGCg- -3'
miRNA:   3'- aCGaGCGG------CCuaGGC-CGAUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 66502 0.67 0.583312
Target:  5'- cGaCUCGCUGGAgCCGcuGCaGCCGGC-Cg -3'
miRNA:   3'- aC-GAGCGGCCUaGGC--CGaUGGCCGaG- -5'
25513 5' -61.5 NC_005337.1 + 59764 0.67 0.542086
Target:  5'- aGCUCGgUGGAcaaaaaggacagCCGGC-GCCGGCa- -3'
miRNA:   3'- aCGAGCgGCCUa-----------GGCCGaUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 59557 0.68 0.524706
Target:  5'- cGCUCGUCGaugcgcaucuGGUCgCGGCggaUGCCGGuCUCc -3'
miRNA:   3'- aCGAGCGGC----------CUAG-GCCG---AUGGCC-GAG- -5'
25513 5' -61.5 NC_005337.1 + 57274 0.67 0.56358
Target:  5'- gGC-CGCgCGGggCCGGCgcGCgCGGCUg -3'
miRNA:   3'- aCGaGCG-GCCuaGGCCGa-UG-GCCGAg -5'
25513 5' -61.5 NC_005337.1 + 57026 0.68 0.515141
Target:  5'- cGC-CgGCUGGAcgUCCGGCUGCUgGGCg- -3'
miRNA:   3'- aCGaG-CGGCCU--AGGCCGAUGG-CCGag -5'
25513 5' -61.5 NC_005337.1 + 52488 0.69 0.424076
Target:  5'- cUGCUCGUCGGcgagCUGGUguuccugaACCGGCUg -3'
miRNA:   3'- -ACGAGCGGCCua--GGCCGa-------UGGCCGAg -5'
25513 5' -61.5 NC_005337.1 + 51528 0.67 0.583312
Target:  5'- cGCUCuUCGGcGUgCGGCUGCCGGg-- -3'
miRNA:   3'- aCGAGcGGCC-UAgGCCGAUGGCCgag -5'
25513 5' -61.5 NC_005337.1 + 49567 0.68 0.486894
Target:  5'- aGCUcguuguccagCGCCGGGUCCGuGggAUCGGCg- -3'
miRNA:   3'- aCGA----------GCGGCCUAGGC-CgaUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 47648 0.66 0.613145
Target:  5'- aGUUCGCUGuGAcgagcCCGGCgcCCGGCa- -3'
miRNA:   3'- aCGAGCGGC-CUa----GGCCGauGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 45048 0.67 0.56358
Target:  5'- aUGCUCcgcaaGCUGGGcgCCGGCcgGCCGGagaUCc -3'
miRNA:   3'- -ACGAG-----CGGCCUa-GGCCGa-UGGCCg--AG- -5'
25513 5' -61.5 NC_005337.1 + 44521 0.68 0.477641
Target:  5'- cGCUCGCggCGGAgcuccUCGGCUACCGcGUg- -3'
miRNA:   3'- aCGAGCG--GCCUa----GGCCGAUGGC-CGag -5'
25513 5' -61.5 NC_005337.1 + 43713 0.67 0.56358
Target:  5'- aGCUCGuCCGuGua-CGGCaGCCGGCg- -3'
miRNA:   3'- aCGAGC-GGC-CuagGCCGaUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 43336 0.68 0.515141
Target:  5'- gGCUCGCCGacGcgCUGGCcGCCGGg-- -3'
miRNA:   3'- aCGAGCGGC--CuaGGCCGaUGGCCgag -5'
25513 5' -61.5 NC_005337.1 + 42550 0.66 0.643099
Target:  5'- cUGCgggCGCUGG-UgCGGCUG-CGGCUg -3'
miRNA:   3'- -ACGa--GCGGCCuAgGCCGAUgGCCGAg -5'
25513 5' -61.5 NC_005337.1 + 42411 0.66 0.643099
Target:  5'- gGcCUCGCUGuGcgCCGGCU-UCGGCg- -3'
miRNA:   3'- aC-GAGCGGC-CuaGGCCGAuGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 39531 0.72 0.30048
Target:  5'- aGCUCG-CGG-UCgUGGCUGCCGGCg- -3'
miRNA:   3'- aCGAGCgGCCuAG-GCCGAUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 39479 0.67 0.583312
Target:  5'- gUGCUCGCCGaGGUCUacgccGCcgaucgACCGGCg- -3'
miRNA:   3'- -ACGAGCGGC-CUAGGc----CGa-----UGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 36551 0.66 0.593232
Target:  5'- gGCUgGgCGGcgCCGGCgagccaccccACCGGCg- -3'
miRNA:   3'- aCGAgCgGCCuaGGCCGa---------UGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 23064 0.67 0.583312
Target:  5'- cGCgCGCCGGAaCgCGGCggccgugcCCGGCaUCg -3'
miRNA:   3'- aCGaGCGGCCUaG-GCCGau------GGCCG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.