Results 61 - 72 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25513 | 5' | -61.5 | NC_005337.1 | + | 7737 | 0.66 | 0.633113 |
Target: 5'- aGCcgguaGCCGGAUCCGGCgagcaUGGUg- -3' miRNA: 3'- aCGag---CGGCCUAGGCCGaug--GCCGag -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 132106 | 0.66 | 0.623126 |
Target: 5'- gUGCgCGUCGGcgCCGuGCgcgGCaGGCUCc -3' miRNA: 3'- -ACGaGCGGCCuaGGC-CGa--UGgCCGAG- -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 99250 | 0.66 | 0.617136 |
Target: 5'- cGCUCGCCgcggacggcgacgcgGGGUUCGGCacggccgucUGCCuGGCg- -3' miRNA: 3'- aCGAGCGG---------------CCUAGGCCG---------AUGG-CCGag -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 133170 | 0.66 | 0.613145 |
Target: 5'- cUGCUC-CCGGcggCGGCgcugcGCCGGCUg -3' miRNA: 3'- -ACGAGcGGCCuagGCCGa----UGGCCGAg -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 128463 | 0.66 | 0.603178 |
Target: 5'- ---cCGCCGGA-CCGGCgcgggagACCGcguGCUCg -3' miRNA: 3'- acgaGCGGCCUaGGCCGa------UGGC---CGAG- -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 73022 | 0.66 | 0.603178 |
Target: 5'- -aCUCcCCGGAgaacgacgaCGGgaGCCGGCUCa -3' miRNA: 3'- acGAGcGGCCUag-------GCCgaUGGCCGAG- -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 129618 | 0.66 | 0.593232 |
Target: 5'- aGCUCGuCCGGcggcUCgUGGCcGCCGGgUCu -3' miRNA: 3'- aCGAGC-GGCCu---AG-GCCGaUGGCCgAG- -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 36551 | 0.66 | 0.593232 |
Target: 5'- gGCUgGgCGGcgCCGGCgagccaccccACCGGCg- -3' miRNA: 3'- aCGAgCgGCCuaGGCCGa---------UGGCCGag -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 81359 | 0.67 | 0.583312 |
Target: 5'- -aCUCGCCgaGGAUCCGuGCgcgguUCGGCUg -3' miRNA: 3'- acGAGCGG--CCUAGGC-CGau---GGCCGAg -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 23064 | 0.67 | 0.583312 |
Target: 5'- cGCgCGCCGGAaCgCGGCggccgugcCCGGCaUCg -3' miRNA: 3'- aCGaGCGGCCUaG-GCCGau------GGCCG-AG- -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 6900 | 0.67 | 0.583312 |
Target: 5'- cGCgcgCGCgCGGGUCC-GC-GCCGGCg- -3' miRNA: 3'- aCGa--GCG-GCCUAGGcCGaUGGCCGag -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 74497 | 0.74 | 0.216275 |
Target: 5'- cGCgUGCCGGcgCCGGCUguccuuuuuguccACCGaGCUCg -3' miRNA: 3'- aCGaGCGGCCuaGGCCGA-------------UGGC-CGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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