miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25513 5' -61.5 NC_005337.1 + 127469 0.67 0.583312
Target:  5'- cGCUCguggacagcgGCUGcGAUCCGGCgggcaucgacACCGGCg- -3'
miRNA:   3'- aCGAG----------CGGC-CUAGGCCGa---------UGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 66502 0.67 0.583312
Target:  5'- cGaCUCGCUGGAgCCGcuGCaGCCGGC-Cg -3'
miRNA:   3'- aC-GAGCGGCCUaGGC--CGaUGGCCGaG- -5'
25513 5' -61.5 NC_005337.1 + 81359 0.67 0.583312
Target:  5'- -aCUCGCCgaGGAUCCGuGCgcgguUCGGCUg -3'
miRNA:   3'- acGAGCGG--CCUAGGC-CGau---GGCCGAg -5'
25513 5' -61.5 NC_005337.1 + 23064 0.67 0.583312
Target:  5'- cGCgCGCCGGAaCgCGGCggccgugcCCGGCaUCg -3'
miRNA:   3'- aCGaGCGGCCUaG-GCCGau------GGCCG-AG- -5'
25513 5' -61.5 NC_005337.1 + 89201 0.67 0.583312
Target:  5'- gGCacgUCgGCaCGGAucUCCGGCcgGCCGGCg- -3'
miRNA:   3'- aCG---AG-CG-GCCU--AGGCCGa-UGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 51528 0.67 0.583312
Target:  5'- cGCUCuUCGGcGUgCGGCUGCCGGg-- -3'
miRNA:   3'- aCGAGcGGCC-UAgGCCGAUGGCCgag -5'
25513 5' -61.5 NC_005337.1 + 39479 0.67 0.583312
Target:  5'- gUGCUCGCCGaGGUCUacgccGCcgaucgACCGGCg- -3'
miRNA:   3'- -ACGAGCGGC-CUAGGc----CGa-----UGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 6900 0.67 0.583312
Target:  5'- cGCgcgCGCgCGGGUCC-GC-GCCGGCg- -3'
miRNA:   3'- aCGa--GCG-GCCUAGGcCGaUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 19101 0.67 0.573426
Target:  5'- gGCggaCGCCGGcGUCCgcgGGC-GCCGGCa- -3'
miRNA:   3'- aCGa--GCGGCC-UAGG---CCGaUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 16015 0.67 0.56358
Target:  5'- cGUUCGCCGGAgugaugaugCgCGGCgucuccuCgGGCUCc -3'
miRNA:   3'- aCGAGCGGCCUa--------G-GCCGau-----GgCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 57274 0.67 0.56358
Target:  5'- gGC-CGCgCGGggCCGGCgcGCgCGGCUg -3'
miRNA:   3'- aCGaGCG-GCCuaGGCCGa-UG-GCCGAg -5'
25513 5' -61.5 NC_005337.1 + 43713 0.67 0.56358
Target:  5'- aGCUCGuCCGuGua-CGGCaGCCGGCg- -3'
miRNA:   3'- aCGAGC-GGC-CuagGCCGaUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 133377 0.67 0.56358
Target:  5'- cGCUCGUCGcGcUCgGGCU-CCuGCUCg -3'
miRNA:   3'- aCGAGCGGC-CuAGgCCGAuGGcCGAG- -5'
25513 5' -61.5 NC_005337.1 + 133377 0.67 0.56358
Target:  5'- cGCUCGUCGcGcUCgGGCU-CCuGCUCg -3'
miRNA:   3'- aCGAGCGGC-CuAGgCCGAuGGcCGAG- -5'
25513 5' -61.5 NC_005337.1 + 13293 0.67 0.56358
Target:  5'- gUGUUCGCCGGAcCCaaGCagUGCCGGUg- -3'
miRNA:   3'- -ACGAGCGGCCUaGGc-CG--AUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 45048 0.67 0.56358
Target:  5'- aUGCUCcgcaaGCUGGGcgCCGGCcgGCCGGagaUCc -3'
miRNA:   3'- -ACGAG-----CGGCCUa-GGCCGa-UGGCCg--AG- -5'
25513 5' -61.5 NC_005337.1 + 78965 0.67 0.56358
Target:  5'- cGCUCGUgaagCGGAUgCGGUgcgugGCgCGGCUg -3'
miRNA:   3'- aCGAGCG----GCCUAgGCCGa----UG-GCCGAg -5'
25513 5' -61.5 NC_005337.1 + 92555 0.67 0.553779
Target:  5'- aGCUCGCC---UCCuGGUUcuucgaggacgGCCGGCUCc -3'
miRNA:   3'- aCGAGCGGccuAGG-CCGA-----------UGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 9762 0.67 0.553779
Target:  5'- gGCcggCGCCGGGU-UGGC-ACCGGcCUCc -3'
miRNA:   3'- aCGa--GCGGCCUAgGCCGaUGGCC-GAG- -5'
25513 5' -61.5 NC_005337.1 + 115576 0.67 0.553779
Target:  5'- -cCUCGCCGGGgcCCGaGCUGCUGuCUCc -3'
miRNA:   3'- acGAGCGGCCUa-GGC-CGAUGGCcGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.