miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 5' -55.6 NC_005337.1 + 77760 0.66 0.858491
Target:  5'- -gGCCGUcUUgGCGCGGU-CGCgGACg -3'
miRNA:   3'- aaCGGUAcAAgCGCGUCAcGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 80143 0.67 0.8249
Target:  5'- -aGCCAUG--CGCGCGGcGCgGCCGucGCg -3'
miRNA:   3'- aaCGGUACaaGCGCGUCaCG-CGGU--UG- -5'
25514 5' -55.6 NC_005337.1 + 80427 0.68 0.769062
Target:  5'- -aGCCGUccgcggCGCGCA--GCGCCAGCc -3'
miRNA:   3'- aaCGGUAcaa---GCGCGUcaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 84141 0.67 0.797703
Target:  5'- -aGUC-UGUccacCGCGCAGaugcGCGCCAGCg -3'
miRNA:   3'- aaCGGuACAa---GCGCGUCa---CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 86254 0.72 0.530047
Target:  5'- -cGCCGUGUUCGUgcuccGCAGcGCGCgGAUc -3'
miRNA:   3'- aaCGGUACAAGCG-----CGUCaCGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 87267 0.76 0.299384
Target:  5'- aUGCCcaggcagauggagGUGUUCGUGCGGUGCGCgauCGGCu -3'
miRNA:   3'- aACGG-------------UACAAGCGCGUCACGCG---GUUG- -5'
25514 5' -55.6 NC_005337.1 + 90625 0.67 0.782591
Target:  5'- gUGCC-UGUucacccguuccuugaUCGCGCGGcgGCGCUGAUc -3'
miRNA:   3'- aACGGuACA---------------AGCGCGUCa-CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 92891 0.66 0.858491
Target:  5'- cUGCCcg---CGCGCGGUugccgGCGUCGGCg -3'
miRNA:   3'- aACGGuacaaGCGCGUCA-----CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 95325 0.66 0.842105
Target:  5'- -cGCCGaucgGUgcgCGuCGCAGUaGCGCCGGa -3'
miRNA:   3'- aaCGGUa---CAa--GC-GCGUCA-CGCGGUUg -5'
25514 5' -55.6 NC_005337.1 + 95397 0.7 0.645464
Target:  5'- -cGCag-GUaggUCGCGguGUGCGCCcGCa -3'
miRNA:   3'- aaCGguaCA---AGCGCguCACGCGGuUG- -5'
25514 5' -55.6 NC_005337.1 + 95924 0.67 0.792082
Target:  5'- -cGUCGUGUgcgugaUGCGCAGcgcguacucgcccgGCGCCGGCg -3'
miRNA:   3'- aaCGGUACAa-----GCGCGUCa-------------CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 97240 0.66 0.866358
Target:  5'- -cGCCAacgacgaguucUG-UCGgGCGGUGaGCCGGCg -3'
miRNA:   3'- aaCGGU-----------ACaAGCgCGUCACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 97998 0.71 0.56104
Target:  5'- -gGCCGcGUUCGCGCAGcggcuggucGCGCUGGCc -3'
miRNA:   3'- aaCGGUaCAAGCGCGUCa--------CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 98778 0.68 0.75726
Target:  5'- -cGCCGUGgaccgguacaaCGCGCucucgAGUGgGCCAACc -3'
miRNA:   3'- aaCGGUACaa---------GCGCG-----UCACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 100381 0.68 0.729088
Target:  5'- -cGCCGccUUCGUGCaucgAGUGCGCgGGCg -3'
miRNA:   3'- aaCGGUacAAGCGCG----UCACGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 100675 0.7 0.645464
Target:  5'- -cGCCGcGUUCGCGCcGcGCGCgCGGCc -3'
miRNA:   3'- aaCGGUaCAAGCGCGuCaCGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 101243 0.68 0.769062
Target:  5'- -cGCgCGUGcUCGCGCuGgacgGCGCgGACg -3'
miRNA:   3'- aaCG-GUACaAGCGCGuCa---CGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 105532 0.66 0.83274
Target:  5'- -cGCCAUGgaCGCGacuggaaCGGUgGCGCCAc- -3'
miRNA:   3'- aaCGGUACaaGCGC-------GUCA-CGCGGUug -5'
25514 5' -55.6 NC_005337.1 + 110359 0.73 0.450955
Target:  5'- cUGCCGcGggCGCGCGG-GCGCgCGGCa -3'
miRNA:   3'- aACGGUaCaaGCGCGUCaCGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 114554 0.67 0.797703
Target:  5'- -gGCCAUcGUggaggCGCggccGCAGaugGCGCCGGCg -3'
miRNA:   3'- aaCGGUA-CAa----GCG----CGUCa--CGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.