Results 41 - 60 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25514 | 5' | -55.6 | NC_005337.1 | + | 72356 | 0.66 | 0.850405 |
Target: 5'- -cGCCAaGUUcCGCGCGaucGCGCgGACg -3' miRNA: 3'- aaCGGUaCAA-GCGCGUca-CGCGgUUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 70879 | 0.7 | 0.624254 |
Target: 5'- -cGCCAUGUccagCGCGCucugcgGCGCCAc- -3' miRNA: 3'- aaCGGUACAa---GCGCGuca---CGCGGUug -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 69146 | 0.72 | 0.540314 |
Target: 5'- -gGCCGccUUCGCGgcCAGUGCGaCCAGCa -3' miRNA: 3'- aaCGGUacAAGCGC--GUCACGC-GGUUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 69137 | 0.67 | 0.822253 |
Target: 5'- -cGCCAUGUacugggagcgcgucUCGCGC-GUGCuGCugCAGCa -3' miRNA: 3'- aaCGGUACA--------------AGCGCGuCACG-CG--GUUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 68732 | 0.66 | 0.866358 |
Target: 5'- -cGcCCGUGcugCGCaCAGUGCGCCuccAGCa -3' miRNA: 3'- aaC-GGUACaa-GCGcGUCACGCGG---UUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 68510 | 0.66 | 0.850405 |
Target: 5'- -gGCCGUGggUGCGCcc-GCGCuCGGCu -3' miRNA: 3'- aaCGGUACaaGCGCGucaCGCG-GUUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 67926 | 0.66 | 0.833601 |
Target: 5'- gUGCCGcgGUggUCGCGCuccacgagcacGUGuCGCCAGCc -3' miRNA: 3'- aACGGUa-CA--AGCGCGu----------CAC-GCGGUUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 67643 | 0.66 | 0.866358 |
Target: 5'- -aGCUGg--UCGCGCGcGUGCuCCAGCa -3' miRNA: 3'- aaCGGUacaAGCGCGU-CACGcGGUUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 67105 | 0.71 | 0.60307 |
Target: 5'- -cGCCGUGagcUCGCGCAGguUGCGCaucACg -3' miRNA: 3'- aaCGGUACa--AGCGCGUC--ACGCGgu-UG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 64828 | 0.69 | 0.677171 |
Target: 5'- cUGcCCAUGUgcgCGCGCgAGcugGCGCCGGa -3' miRNA: 3'- aAC-GGUACAa--GCGCG-UCa--CGCGGUUg -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 64363 | 0.66 | 0.859288 |
Target: 5'- -aGCCGUGUccagcgCGCGCAGgagcacguugucggaGCGgCGGCa -3' miRNA: 3'- aaCGGUACAa-----GCGCGUCa--------------CGCgGUUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 62755 | 0.66 | 0.858491 |
Target: 5'- -gGCCGUGUucgggUCGCGCAuGUaCGCCc-- -3' miRNA: 3'- aaCGGUACA-----AGCGCGU-CAcGCGGuug -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 59879 | 0.74 | 0.432196 |
Target: 5'- gUGCCAgagccccggagaUGUacgucUCGCGCAGcUGCGCCAu- -3' miRNA: 3'- aACGGU------------ACA-----AGCGCGUC-ACGCGGUug -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 57706 | 0.66 | 0.857692 |
Target: 5'- aUGCa--GUUCGCGCcggagguGGUGC-CCAACu -3' miRNA: 3'- aACGguaCAAGCGCG-------UCACGcGGUUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 57480 | 0.66 | 0.842105 |
Target: 5'- -gGgCGUGaaCgGCGCGGUGCGCCu-- -3' miRNA: 3'- aaCgGUACaaG-CGCGUCACGCGGuug -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 57148 | 0.68 | 0.759239 |
Target: 5'- -cGCCGUGga-GCGCAGcacccgGCGCguGCu -3' miRNA: 3'- aaCGGUACaagCGCGUCa-----CGCGguUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 57086 | 0.72 | 0.499702 |
Target: 5'- -cGCCcgcUGUUCGCcauccGCGGgugGCGCCGGCa -3' miRNA: 3'- aaCGGu--ACAAGCG-----CGUCa--CGCGGUUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 53651 | 0.7 | 0.613654 |
Target: 5'- -cGCCGUGaUCGCcgcgauGCAGcGCGUCGGCg -3' miRNA: 3'- aaCGGUACaAGCG------CGUCaCGCGGUUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 53595 | 0.68 | 0.749296 |
Target: 5'- -cGCaCAUGcgCGCGCGGaagcGCGCCGcGCa -3' miRNA: 3'- aaCG-GUACaaGCGCGUCa---CGCGGU-UG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 52506 | 0.73 | 0.449059 |
Target: 5'- -cGCCAUGcgcaaccugcaCGCGCAGgagaacgGCGCCGGCg -3' miRNA: 3'- aaCGGUACaa---------GCGCGUCa------CGCGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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