miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 5' -55.6 NC_005337.1 + 100675 0.7 0.645464
Target:  5'- -cGCCGcGUUCGCGCcGcGCGCgCGGCc -3'
miRNA:   3'- aaCGGUaCAAGCGCGuCaCGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 80427 0.68 0.769062
Target:  5'- -aGCCGUccgcggCGCGCA--GCGCCAGCc -3'
miRNA:   3'- aaCGGUAcaa---GCGCGUcaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 98778 0.68 0.75726
Target:  5'- -cGCCGUGgaccgguacaaCGCGCucucgAGUGgGCCAACc -3'
miRNA:   3'- aaCGGUACaa---------GCGCG-----UCACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 23762 0.68 0.749296
Target:  5'- -cGCCGUGUUcaccaCGCGCGa-GCGCCAc- -3'
miRNA:   3'- aaCGGUACAA-----GCGCGUcaCGCGGUug -5'
25514 5' -55.6 NC_005337.1 + 73447 0.69 0.718844
Target:  5'- -cGCCAguucUUCGCGCGGcgGUGCCGc- -3'
miRNA:   3'- aaCGGUac--AAGCGCGUCa-CGCGGUug -5'
25514 5' -55.6 NC_005337.1 + 6760 0.69 0.718844
Target:  5'- -cGCCAUGUagugcaGCGCGGUGUucccGCCggUg -3'
miRNA:   3'- aaCGGUACAag----CGCGUCACG----CGGuuG- -5'
25514 5' -55.6 NC_005337.1 + 774 0.69 0.718844
Target:  5'- -gGCCAUGUgcugCGCGC----CGCCGACg -3'
miRNA:   3'- aaCGGUACAa---GCGCGucacGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 52135 0.69 0.687673
Target:  5'- -gGCCuucguggacgcGUGUcgCGCGCucaUGCGCCAGCg -3'
miRNA:   3'- aaCGG-----------UACAa-GCGCGuc-ACGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 42398 0.69 0.687673
Target:  5'- -cGCCGcgg-CGCGCGgccucgcuGUGCGCCGGCu -3'
miRNA:   3'- aaCGGUacaaGCGCGU--------CACGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 23086 0.69 0.687673
Target:  5'- gUGCCcgGcaucgugCGCGCGGUG-GUCAGCa -3'
miRNA:   3'- aACGGuaCaa-----GCGCGUCACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 124782 0.69 0.687673
Target:  5'- -gGCCAUcgagcucugCGCGCAGaUGgGCCGGCg -3'
miRNA:   3'- aaCGGUAcaa------GCGCGUC-ACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 64828 0.69 0.677171
Target:  5'- cUGcCCAUGUgcgCGCGCgAGcugGCGCCGGa -3'
miRNA:   3'- aAC-GGUACAa--GCGCG-UCa--CGCGGUUg -5'
25514 5' -55.6 NC_005337.1 + 69146 0.72 0.540314
Target:  5'- -gGCCGccUUCGCGgcCAGUGCGaCCAGCa -3'
miRNA:   3'- aaCGGUacAAGCGC--GUCACGC-GGUUG- -5'
25514 5' -55.6 NC_005337.1 + 86254 0.72 0.530047
Target:  5'- -cGCCGUGUUCGUgcuccGCAGcGCGCgGAUc -3'
miRNA:   3'- aaCGGUACAAGCG-----CGUCaCGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 57086 0.72 0.499702
Target:  5'- -cGCCcgcUGUUCGCcauccGCGGgugGCGCCGGCa -3'
miRNA:   3'- aaCGGu--ACAAGCG-----CGUCa--CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 52506 0.73 0.449059
Target:  5'- -cGCCAUGcgcaaccugcaCGCGCAGgagaacgGCGCCGGCg -3'
miRNA:   3'- aaCGGUACaa---------GCGCGUCa------CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 130521 0.74 0.419339
Target:  5'- -gGUCAUGgaguuccuggugCGCGCGG-GCGCCAACg -3'
miRNA:   3'- aaCGGUACaa----------GCGCGUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 48670 0.75 0.353784
Target:  5'- -aGCuCAUGgagaucgUCGCGCAGauccgggGCGCCAACg -3'
miRNA:   3'- aaCG-GUACa------AGCGCGUCa------CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 87267 0.76 0.299384
Target:  5'- aUGCCcaggcagauggagGUGUUCGUGCGGUGCGCgauCGGCu -3'
miRNA:   3'- aACGG-------------UACAAGCGCGUCACGCG---GUUG- -5'
25514 5' -55.6 NC_005337.1 + 128039 0.66 0.866358
Target:  5'- -gGCCAaGgcCGUGCAcGUGC-CCAACg -3'
miRNA:   3'- aaCGGUaCaaGCGCGU-CACGcGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.