miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 5' -55.6 NC_005337.1 + 114554 0.67 0.797703
Target:  5'- -gGCCAUcGUggaggCGCggccGCAGaugGCGCCGGCg -3'
miRNA:   3'- aaCGGUA-CAa----GCG----CGUCa--CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 74610 0.67 0.797703
Target:  5'- -gGUCGUGcUCGCGg---GCGCCGACa -3'
miRNA:   3'- aaCGGUACaAGCGCgucaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 119852 0.67 0.797703
Target:  5'- cUGCCGcacgugucuccUGgcgGCGCGGUucaGCGCCGGCg -3'
miRNA:   3'- aACGGU-----------ACaagCGCGUCA---CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 39438 0.67 0.797703
Target:  5'- -cGCUcgGgcCGCGCucGGUGCGCaCGAUg -3'
miRNA:   3'- aaCGGuaCaaGCGCG--UCACGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 2164 0.67 0.806942
Target:  5'- -aGCC-UGc-CGCGCAcgGCGCCGACg -3'
miRNA:   3'- aaCGGuACaaGCGCGUcaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 100381 0.68 0.729088
Target:  5'- -cGCCGccUUCGUGCaucgAGUGCGCgGGCg -3'
miRNA:   3'- aaCGGUacAAGCGCG----UCACGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 12034 0.68 0.729088
Target:  5'- aUGCCGgucaucggCGUGCGGUcguccggcgugcGCGCCGACa -3'
miRNA:   3'- aACGGUacaa----GCGCGUCA------------CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 774 0.69 0.718844
Target:  5'- -gGCCAUGUgcugCGCGC----CGCCGACg -3'
miRNA:   3'- aaCGGUACAa---GCGCGucacGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 87267 0.76 0.299384
Target:  5'- aUGCCcaggcagauggagGUGUUCGUGCGGUGCGCgauCGGCu -3'
miRNA:   3'- aACGG-------------UACAAGCGCGUCACGCG---GUUG- -5'
25514 5' -55.6 NC_005337.1 + 48670 0.75 0.353784
Target:  5'- -aGCuCAUGgagaucgUCGCGCAGauccgggGCGCCAACg -3'
miRNA:   3'- aaCG-GUACa------AGCGCGUCa------CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 130521 0.74 0.419339
Target:  5'- -gGUCAUGgaguuccuggugCGCGCGG-GCGCCAACg -3'
miRNA:   3'- aaCGGUACaa----------GCGCGUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 52506 0.73 0.449059
Target:  5'- -cGCCAUGcgcaaccugcaCGCGCAGgagaacgGCGCCGGCg -3'
miRNA:   3'- aaCGGUACaa---------GCGCGUCa------CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 57086 0.72 0.499702
Target:  5'- -cGCCcgcUGUUCGCcauccGCGGgugGCGCCGGCa -3'
miRNA:   3'- aaCGGu--ACAAGCG-----CGUCa--CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 86254 0.72 0.530047
Target:  5'- -cGCCGUGUUCGUgcuccGCAGcGCGCgGAUc -3'
miRNA:   3'- aaCGGUACAAGCG-----CGUCaCGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 69146 0.72 0.540314
Target:  5'- -gGCCGccUUCGCGgcCAGUGCGaCCAGCa -3'
miRNA:   3'- aaCGGUacAAGCGC--GUCACGC-GGUUG- -5'
25514 5' -55.6 NC_005337.1 + 67105 0.71 0.60307
Target:  5'- -cGCCGUGagcUCGCGCAGguUGCGCaucACg -3'
miRNA:   3'- aaCGGUACa--AGCGCGUC--ACGCGgu-UG- -5'
25514 5' -55.6 NC_005337.1 + 39258 0.7 0.613654
Target:  5'- -cGCCGUcccgccGUUCGCGguGgccGCGCUGGCg -3'
miRNA:   3'- aaCGGUA------CAAGCGCguCa--CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 25201 0.7 0.624254
Target:  5'- -gGCCAUGUucgUCGCGCugcagauGUGgGCCGu- -3'
miRNA:   3'- aaCGGUACA---AGCGCGu------CACgCGGUug -5'
25514 5' -55.6 NC_005337.1 + 95397 0.7 0.645464
Target:  5'- -cGCag-GUaggUCGCGguGUGCGCCcGCa -3'
miRNA:   3'- aaCGguaCA---AGCGCguCACGCGGuUG- -5'
25514 5' -55.6 NC_005337.1 + 13833 0.7 0.656057
Target:  5'- -gGaCCAUGUggggCGCGCAGUcCGCCGc- -3'
miRNA:   3'- aaC-GGUACAa---GCGCGUCAcGCGGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.