miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 5' -55.6 NC_005337.1 + 114554 0.67 0.797703
Target:  5'- -gGCCAUcGUggaggCGCggccGCAGaugGCGCCGGCg -3'
miRNA:   3'- aaCGGUA-CAa----GCG----CGUCa--CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 57706 0.66 0.857692
Target:  5'- aUGCa--GUUCGCGCcggagguGGUGC-CCAACu -3'
miRNA:   3'- aACGguaCAAGCGCG-------UCACGcGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 38830 0.66 0.850405
Target:  5'- -cGCCGcgcUGgaCGCGUAcgccggccuGUGCGCCAAg -3'
miRNA:   3'- aaCGGU---ACaaGCGCGU---------CACGCGGUUg -5'
25514 5' -55.6 NC_005337.1 + 95397 0.7 0.645464
Target:  5'- -cGCag-GUaggUCGCGguGUGCGCCcGCa -3'
miRNA:   3'- aaCGguaCA---AGCGCguCACGCGGuUG- -5'
25514 5' -55.6 NC_005337.1 + 128309 0.66 0.873999
Target:  5'- -cGCCGucUGcUCGCGCGcgGCGCgAGCg -3'
miRNA:   3'- aaCGGU--ACaAGCGCGUcaCGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 76397 0.66 0.873999
Target:  5'- --aCCGUG--CGCGCGGgGCGCUGGCg -3'
miRNA:   3'- aacGGUACaaGCGCGUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 47320 0.67 0.806942
Target:  5'- -gGUCAUGUUCgagGCGCGcGUGgucauggaCGCCGACg -3'
miRNA:   3'- aaCGGUACAAG---CGCGU-CAC--------GCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 10445 0.72 0.509735
Target:  5'- -gGCgGUGcgCGCGUcGUGCGCCAGg -3'
miRNA:   3'- aaCGgUACaaGCGCGuCACGCGGUUg -5'
25514 5' -55.6 NC_005337.1 + 45883 0.66 0.873999
Target:  5'- -cGCCAUGUacucggacugCGCGUGG-GCGUgGGCg -3'
miRNA:   3'- aaCGGUACAa---------GCGCGUCaCGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 132102 0.66 0.866358
Target:  5'- -cGCCGUGcgcgUCgGCGCcGUGCG-CGGCa -3'
miRNA:   3'- aaCGGUACa---AG-CGCGuCACGCgGUUG- -5'
25514 5' -55.6 NC_005337.1 + 123569 0.68 0.769062
Target:  5'- -gGCCGUGgaCGCGgAGUGcCGCUgcuGCg -3'
miRNA:   3'- aaCGGUACaaGCGCgUCAC-GCGGu--UG- -5'
25514 5' -55.6 NC_005337.1 + 101243 0.68 0.769062
Target:  5'- -cGCgCGUGcUCGCGCuGgacgGCGCgGACg -3'
miRNA:   3'- aaCG-GUACaAGCGCGuCa---CGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 46002 0.67 0.788304
Target:  5'- -gGCCAUGUccucCGCGgcgcccgcCGGcGCGCCGGCa -3'
miRNA:   3'- aaCGGUACAa---GCGC--------GUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 95924 0.67 0.792082
Target:  5'- -cGUCGUGUgcgugaUGCGCAGcgcguacucgcccgGCGCCGGCg -3'
miRNA:   3'- aaCGGUACAa-----GCGCGUCa-------------CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 42621 0.67 0.797703
Target:  5'- -cGCCAUGUgCGgcacCGCGGUG-GUCGACg -3'
miRNA:   3'- aaCGGUACAaGC----GCGUCACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 98778 0.68 0.75726
Target:  5'- -cGCCGUGgaccgguacaaCGCGCucucgAGUGgGCCAACc -3'
miRNA:   3'- aaCGGUACaa---------GCGCG-----UCACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 64828 0.69 0.677171
Target:  5'- cUGcCCAUGUgcgCGCGCgAGcugGCGCCGGa -3'
miRNA:   3'- aAC-GGUACAa--GCGCG-UCa--CGCGGUUg -5'
25514 5' -55.6 NC_005337.1 + 100675 0.7 0.645464
Target:  5'- -cGCCGcGUUCGCGCcGcGCGCgCGGCc -3'
miRNA:   3'- aaCGGUaCAAGCGCGuCaCGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 46452 0.7 0.634861
Target:  5'- -cGCgAUcugCGCGCGGcGCGCCGGCg -3'
miRNA:   3'- aaCGgUAcaaGCGCGUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 97240 0.66 0.866358
Target:  5'- -cGCCAacgacgaguucUG-UCGgGCGGUGaGCCGGCg -3'
miRNA:   3'- aaCGGU-----------ACaAGCgCGUCACgCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.