Results 61 - 80 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25514 | 5' | -55.6 | NC_005337.1 | + | 125519 | 0.71 | 0.571486 |
Target: 5'- gUGCgGcUGcUCGUGCGGUacgGCGCCGACa -3' miRNA: 3'- aACGgU-ACaAGCGCGUCA---CGCGGUUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 10445 | 0.72 | 0.509735 |
Target: 5'- -gGCgGUGcgCGCGUcGUGCGCCAGg -3' miRNA: 3'- aaCGgUACaaGCGCGuCACGCGGUUg -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 39376 | 0.73 | 0.460501 |
Target: 5'- -cGCCAccgUgGCGCAGUGCGCCu-- -3' miRNA: 3'- aaCGGUacaAgCGCGUCACGCGGuug -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 110359 | 0.73 | 0.450955 |
Target: 5'- cUGCCGcGggCGCGCGG-GCGCgCGGCa -3' miRNA: 3'- aACGGUaCaaGCGCGUCaCGCG-GUUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 123569 | 0.68 | 0.769062 |
Target: 5'- -gGCCGUGgaCGCGgAGUGcCGCUgcuGCg -3' miRNA: 3'- aaCGGUACaaGCGCgUCAC-GCGGu--UG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 101243 | 0.68 | 0.769062 |
Target: 5'- -cGCgCGUGcUCGCGCuGgacgGCGCgGACg -3' miRNA: 3'- aaCG-GUACaAGCGCGuCa---CGCGgUUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 68732 | 0.66 | 0.866358 |
Target: 5'- -cGcCCGUGcugCGCaCAGUGCGCCuccAGCa -3' miRNA: 3'- aaC-GGUACaa-GCGcGUCACGCGG---UUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 21170 | 0.66 | 0.858491 |
Target: 5'- -cGCCGUucgUCGCGCGGaccUGCGCgcGCa -3' miRNA: 3'- aaCGGUAca-AGCGCGUC---ACGCGguUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 77760 | 0.66 | 0.858491 |
Target: 5'- -gGCCGUcUUgGCGCGGU-CGCgGACg -3' miRNA: 3'- aaCGGUAcAAgCGCGUCAcGCGgUUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 62755 | 0.66 | 0.858491 |
Target: 5'- -gGCCGUGUucgggUCGCGCAuGUaCGCCc-- -3' miRNA: 3'- aaCGGUACA-----AGCGCGU-CAcGCGGuug -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 34800 | 0.66 | 0.858491 |
Target: 5'- -cGCCAUcugCGCGUcgcgGGUG-GCCAGCg -3' miRNA: 3'- aaCGGUAcaaGCGCG----UCACgCGGUUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 68510 | 0.66 | 0.850405 |
Target: 5'- -gGCCGUGggUGCGCcc-GCGCuCGGCu -3' miRNA: 3'- aaCGGUACaaGCGCGucaCGCG-GUUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 14605 | 0.66 | 0.850405 |
Target: 5'- -gGCCAUGUUCcccgaguacCGCAGUaucGCGUUGACg -3' miRNA: 3'- aaCGGUACAAGc--------GCGUCA---CGCGGUUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 126129 | 0.66 | 0.842105 |
Target: 5'- -cGCCGUG--CGCGCGGccaUGC-CCGGCg -3' miRNA: 3'- aaCGGUACaaGCGCGUC---ACGcGGUUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 95325 | 0.66 | 0.842105 |
Target: 5'- -cGCCGaucgGUgcgCGuCGCAGUaGCGCCGGa -3' miRNA: 3'- aaCGGUa---CAa--GC-GCGUCA-CGCGGUUg -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 74486 | 0.66 | 0.833601 |
Target: 5'- -gGCCucGUGgUCGCGUGccgGCGCCGGCu -3' miRNA: 3'- aaCGG--UACaAGCGCGUca-CGCGGUUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 47320 | 0.67 | 0.806942 |
Target: 5'- -gGUCAUGUUCgagGCGCGcGUGgucauggaCGCCGACg -3' miRNA: 3'- aaCGGUACAAG---CGCGU-CAC--------GCGGUUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 42621 | 0.67 | 0.797703 |
Target: 5'- -cGCCAUGUgCGgcacCGCGGUG-GUCGACg -3' miRNA: 3'- aaCGGUACAaGC----GCGUCACgCGGUUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 95924 | 0.67 | 0.792082 |
Target: 5'- -cGUCGUGUgcgugaUGCGCAGcgcguacucgcccgGCGCCGGCg -3' miRNA: 3'- aaCGGUACAa-----GCGCGUCa-------------CGCGGUUG- -5' |
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25514 | 5' | -55.6 | NC_005337.1 | + | 46002 | 0.67 | 0.788304 |
Target: 5'- -gGCCAUGUccucCGCGgcgcccgcCGGcGCGCCGGCa -3' miRNA: 3'- aaCGGUACAa---GCGC--------GUCaCGCGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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