miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 5' -55.6 NC_005337.1 + 125519 0.71 0.571486
Target:  5'- gUGCgGcUGcUCGUGCGGUacgGCGCCGACa -3'
miRNA:   3'- aACGgU-ACaAGCGCGUCA---CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 10445 0.72 0.509735
Target:  5'- -gGCgGUGcgCGCGUcGUGCGCCAGg -3'
miRNA:   3'- aaCGgUACaaGCGCGuCACGCGGUUg -5'
25514 5' -55.6 NC_005337.1 + 39376 0.73 0.460501
Target:  5'- -cGCCAccgUgGCGCAGUGCGCCu-- -3'
miRNA:   3'- aaCGGUacaAgCGCGUCACGCGGuug -5'
25514 5' -55.6 NC_005337.1 + 110359 0.73 0.450955
Target:  5'- cUGCCGcGggCGCGCGG-GCGCgCGGCa -3'
miRNA:   3'- aACGGUaCaaGCGCGUCaCGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 123569 0.68 0.769062
Target:  5'- -gGCCGUGgaCGCGgAGUGcCGCUgcuGCg -3'
miRNA:   3'- aaCGGUACaaGCGCgUCAC-GCGGu--UG- -5'
25514 5' -55.6 NC_005337.1 + 101243 0.68 0.769062
Target:  5'- -cGCgCGUGcUCGCGCuGgacgGCGCgGACg -3'
miRNA:   3'- aaCG-GUACaAGCGCGuCa---CGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 68732 0.66 0.866358
Target:  5'- -cGcCCGUGcugCGCaCAGUGCGCCuccAGCa -3'
miRNA:   3'- aaC-GGUACaa-GCGcGUCACGCGG---UUG- -5'
25514 5' -55.6 NC_005337.1 + 21170 0.66 0.858491
Target:  5'- -cGCCGUucgUCGCGCGGaccUGCGCgcGCa -3'
miRNA:   3'- aaCGGUAca-AGCGCGUC---ACGCGguUG- -5'
25514 5' -55.6 NC_005337.1 + 77760 0.66 0.858491
Target:  5'- -gGCCGUcUUgGCGCGGU-CGCgGACg -3'
miRNA:   3'- aaCGGUAcAAgCGCGUCAcGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 62755 0.66 0.858491
Target:  5'- -gGCCGUGUucgggUCGCGCAuGUaCGCCc-- -3'
miRNA:   3'- aaCGGUACA-----AGCGCGU-CAcGCGGuug -5'
25514 5' -55.6 NC_005337.1 + 34800 0.66 0.858491
Target:  5'- -cGCCAUcugCGCGUcgcgGGUG-GCCAGCg -3'
miRNA:   3'- aaCGGUAcaaGCGCG----UCACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 68510 0.66 0.850405
Target:  5'- -gGCCGUGggUGCGCcc-GCGCuCGGCu -3'
miRNA:   3'- aaCGGUACaaGCGCGucaCGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 14605 0.66 0.850405
Target:  5'- -gGCCAUGUUCcccgaguacCGCAGUaucGCGUUGACg -3'
miRNA:   3'- aaCGGUACAAGc--------GCGUCA---CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 126129 0.66 0.842105
Target:  5'- -cGCCGUG--CGCGCGGccaUGC-CCGGCg -3'
miRNA:   3'- aaCGGUACaaGCGCGUC---ACGcGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 95325 0.66 0.842105
Target:  5'- -cGCCGaucgGUgcgCGuCGCAGUaGCGCCGGa -3'
miRNA:   3'- aaCGGUa---CAa--GC-GCGUCA-CGCGGUUg -5'
25514 5' -55.6 NC_005337.1 + 74486 0.66 0.833601
Target:  5'- -gGCCucGUGgUCGCGUGccgGCGCCGGCu -3'
miRNA:   3'- aaCGG--UACaAGCGCGUca-CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 47320 0.67 0.806942
Target:  5'- -gGUCAUGUUCgagGCGCGcGUGgucauggaCGCCGACg -3'
miRNA:   3'- aaCGGUACAAG---CGCGU-CAC--------GCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 42621 0.67 0.797703
Target:  5'- -cGCCAUGUgCGgcacCGCGGUG-GUCGACg -3'
miRNA:   3'- aaCGGUACAaGC----GCGUCACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 95924 0.67 0.792082
Target:  5'- -cGUCGUGUgcgugaUGCGCAGcgcguacucgcccgGCGCCGGCg -3'
miRNA:   3'- aaCGGUACAa-----GCGCGUCa-------------CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 46002 0.67 0.788304
Target:  5'- -gGCCAUGUccucCGCGgcgcccgcCGGcGCGCCGGCa -3'
miRNA:   3'- aaCGGUACAa---GCGC--------GUCaCGCGGUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.