Results 81 - 96 of 96 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25514 | 5' | -55.6 | NC_005337.1 | + | 21170 | 0.66 | 0.858491 |
Target: 5'- -cGCCGUucgUCGCGCGGaccUGCGCgcGCa -3' miRNA: 3'- aaCGGUAca-AGCGCGUC---ACGCGguUG- -5' |
|||||||
25514 | 5' | -55.6 | NC_005337.1 | + | 68732 | 0.66 | 0.866358 |
Target: 5'- -cGcCCGUGcugCGCaCAGUGCGCCuccAGCa -3' miRNA: 3'- aaC-GGUACaa-GCGcGUCACGCGG---UUG- -5' |
|||||||
25514 | 5' | -55.6 | NC_005337.1 | + | 97240 | 0.66 | 0.866358 |
Target: 5'- -cGCCAacgacgaguucUG-UCGgGCGGUGaGCCGGCg -3' miRNA: 3'- aaCGGU-----------ACaAGCgCGUCACgCGGUUG- -5' |
|||||||
25514 | 5' | -55.6 | NC_005337.1 | + | 95325 | 0.66 | 0.842105 |
Target: 5'- -cGCCGaucgGUgcgCGuCGCAGUaGCGCCGGa -3' miRNA: 3'- aaCGGUa---CAa--GC-GCGUCA-CGCGGUUg -5' |
|||||||
25514 | 5' | -55.6 | NC_005337.1 | + | 74486 | 0.66 | 0.833601 |
Target: 5'- -gGCCucGUGgUCGCGUGccgGCGCCGGCu -3' miRNA: 3'- aaCGG--UACaAGCGCGUca-CGCGGUUG- -5' |
|||||||
25514 | 5' | -55.6 | NC_005337.1 | + | 67926 | 0.66 | 0.833601 |
Target: 5'- gUGCCGcgGUggUCGCGCuccacgagcacGUGuCGCCAGCc -3' miRNA: 3'- aACGGUa-CA--AGCGCGu----------CAC-GCGGUUG- -5' |
|||||||
25514 | 5' | -55.6 | NC_005337.1 | + | 101243 | 0.68 | 0.769062 |
Target: 5'- -cGCgCGUGcUCGCGCuGgacgGCGCgGACg -3' miRNA: 3'- aaCG-GUACaAGCGCGuCa---CGCGgUUG- -5' |
|||||||
25514 | 5' | -55.6 | NC_005337.1 | + | 46002 | 0.67 | 0.788304 |
Target: 5'- -gGCCAUGUccucCGCGgcgcccgcCGGcGCGCCGGCa -3' miRNA: 3'- aaCGGUACAa---GCGC--------GUCaCGCGGUUG- -5' |
|||||||
25514 | 5' | -55.6 | NC_005337.1 | + | 95924 | 0.67 | 0.792082 |
Target: 5'- -cGUCGUGUgcgugaUGCGCAGcgcguacucgcccgGCGCCGGCg -3' miRNA: 3'- aaCGGUACAa-----GCGCGUCa-------------CGCGGUUG- -5' |
|||||||
25514 | 5' | -55.6 | NC_005337.1 | + | 42621 | 0.67 | 0.797703 |
Target: 5'- -cGCCAUGUgCGgcacCGCGGUG-GUCGACg -3' miRNA: 3'- aaCGGUACAaGC----GCGUCACgCGGUUG- -5' |
|||||||
25514 | 5' | -55.6 | NC_005337.1 | + | 47320 | 0.67 | 0.806942 |
Target: 5'- -gGUCAUGUUCgagGCGCGcGUGgucauggaCGCCGACg -3' miRNA: 3'- aaCGGUACAAG---CGCGU-CAC--------GCGGUUG- -5' |
|||||||
25514 | 5' | -55.6 | NC_005337.1 | + | 39952 | 0.67 | 0.816011 |
Target: 5'- -cGCC----UCGCGCGG-GCGCuCGACg -3' miRNA: 3'- aaCGGuacaAGCGCGUCaCGCG-GUUG- -5' |
|||||||
25514 | 5' | -55.6 | NC_005337.1 | + | 69137 | 0.67 | 0.822253 |
Target: 5'- -cGCCAUGUacugggagcgcgucUCGCGC-GUGCuGCugCAGCa -3' miRNA: 3'- aaCGGUACA--------------AGCGCGuCACG-CG--GUUG- -5' |
|||||||
25514 | 5' | -55.6 | NC_005337.1 | + | 80143 | 0.67 | 0.8249 |
Target: 5'- -aGCCAUG--CGCGCGGcGCgGCCGucGCg -3' miRNA: 3'- aaCGGUACaaGCGCGUCaCG-CGGU--UG- -5' |
|||||||
25514 | 5' | -55.6 | NC_005337.1 | + | 46366 | 0.67 | 0.8249 |
Target: 5'- -cGCCG-----GCGCAGgcGCGCCAGCg -3' miRNA: 3'- aaCGGUacaagCGCGUCa-CGCGGUUG- -5' |
|||||||
25514 | 5' | -55.6 | NC_005337.1 | + | 132102 | 0.66 | 0.866358 |
Target: 5'- -cGCCGUGcgcgUCgGCGCcGUGCG-CGGCa -3' miRNA: 3'- aaCGGUACa---AG-CGCGuCACGCgGUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home