miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25516 5' -60.9 NC_005337.1 + 123600 0.7 0.373152
Target:  5'- cUGCG-GCCgcacGUGCcGCGCUCGCGGGu -3'
miRNA:   3'- uACGUaCGGa---UACGcCGCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 64234 0.66 0.636594
Target:  5'- -gGCAgcGCCUcuuUGCGGCGC-UGCGGc -3'
miRNA:   3'- uaCGUa-CGGAu--ACGCCGCGgGCGCCu -5'
25516 5' -60.9 NC_005337.1 + 43834 0.66 0.636594
Target:  5'- cUGCAgcggGCCg--GCGGCG-CgGUGGAg -3'
miRNA:   3'- uACGUa---CGGauaCGCCGCgGgCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 100756 0.66 0.636594
Target:  5'- -cGCGUGCagc--CGGCGCaCgGCGGAg -3'
miRNA:   3'- uaCGUACGgauacGCCGCG-GgCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 126030 0.66 0.636594
Target:  5'- -cGCGUGCgUGUGUcucauGcGCGCCggUGCGGAc -3'
miRNA:   3'- uaCGUACGgAUACG-----C-CGCGG--GCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 74938 0.66 0.645737
Target:  5'- -cGCGcgGCCgcgcggAUGCGGUGCuggggcuCCGCGGc -3'
miRNA:   3'- uaCGUa-CGGa-----UACGCCGCG-------GGCGCCu -5'
25516 5' -60.9 NC_005337.1 + 35578 0.66 0.646753
Target:  5'- -cGgAUGCCUAgcgagGCGGaucCCCGcCGGAg -3'
miRNA:   3'- uaCgUACGGAUa----CGCCgc-GGGC-GCCU- -5'
25516 5' -60.9 NC_005337.1 + 36548 0.66 0.646753
Target:  5'- -gGCG-GCUgg-GCGGCGCCgGCGa- -3'
miRNA:   3'- uaCGUaCGGauaCGCCGCGGgCGCcu -5'
25516 5' -60.9 NC_005337.1 + 41399 0.66 0.646753
Target:  5'- -cGCggGCagAUGacgucCGGCGUCCGCGGGa -3'
miRNA:   3'- uaCGuaCGgaUAC-----GCCGCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 99657 0.66 0.635578
Target:  5'- -gGCAUcGCCgc-GCGGCugggcgcGCCCGUGGc -3'
miRNA:   3'- uaCGUA-CGGauaCGCCG-------CGGGCGCCu -5'
25516 5' -60.9 NC_005337.1 + 99151 0.66 0.626432
Target:  5'- aGUGCGccGCaCUggGCGuccGCGCCgCGCGGAc -3'
miRNA:   3'- -UACGUa-CG-GAuaCGC---CGCGG-GCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 99573 0.71 0.357216
Target:  5'- cUGCGgcUGCUcGUGCGGCGCUUcggGCGGGa -3'
miRNA:   3'- uACGU--ACGGaUACGCCGCGGG---CGCCU- -5'
25516 5' -60.9 NC_005337.1 + 99391 0.71 0.357216
Target:  5'- -gGCAccaccUGCCgGUGCuGCGCaCCGCGGGc -3'
miRNA:   3'- uaCGU-----ACGGaUACGcCGCG-GGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 42617 0.67 0.536019
Target:  5'- -cGCccGCCaUGUGCGGCa-CCGCGGu -3'
miRNA:   3'- uaCGuaCGG-AUACGCCGcgGGCGCCu -5'
25516 5' -60.9 NC_005337.1 + 115328 0.67 0.533069
Target:  5'- cGUGCucgcgacGCCcg-GCGGCgggcggaucugcguGCCCGCGGAc -3'
miRNA:   3'- -UACGua-----CGGauaCGCCG--------------CGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 66093 0.72 0.298348
Target:  5'- -gGCGgagGCgCUGUGCGGCGUCUGCGc- -3'
miRNA:   3'- uaCGUa--CG-GAUACGCCGCGGGCGCcu -5'
25516 5' -60.9 NC_005337.1 + 105366 0.67 0.526209
Target:  5'- -cGCGUGCUUGgucaccuCGGCGCCCGgcCGGu -3'
miRNA:   3'- uaCGUACGGAUac-----GCCGCGGGC--GCCu -5'
25516 5' -60.9 NC_005337.1 + 5829 0.67 0.526209
Target:  5'- cUGCAgagGUCguaccCGGcCGCCCGCGGGg -3'
miRNA:   3'- uACGUa--CGGauac-GCC-GCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 29375 0.68 0.516467
Target:  5'- -gGCG-GCCgucGCGGCGCUgGUGGGg -3'
miRNA:   3'- uaCGUaCGGauaCGCCGCGGgCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 48615 0.68 0.506799
Target:  5'- -aGCGUGUCUGUGCagaacauGUGCUCgGCGGAc -3'
miRNA:   3'- uaCGUACGGAUACGc------CGCGGG-CGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.