Results 41 - 60 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25517 | 3' | -60.6 | NC_005337.1 | + | 125500 | 0.75 | 0.234207 |
Target: 5'- cGGCAUCGAGGUGgAGGUcgugcGGCUGCUc -3' miRNA: 3'- cCCGUAGCUCCGCgUCUA-----CCGGCGGu -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 96291 | 0.76 | 0.197823 |
Target: 5'- cGGCGUUGGGGUGCAuGAucugcaUGGCCGCgCAg -3' miRNA: 3'- cCCGUAGCUCCGCGU-CU------ACCGGCG-GU- -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 75982 | 0.78 | 0.139644 |
Target: 5'- cGGCAcguccUCGaAGGCGaAGGUGGCCGCCGu -3' miRNA: 3'- cCCGU-----AGC-UCCGCgUCUACCGGCGGU- -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 64018 | 0.87 | 0.032955 |
Target: 5'- cGGGCAgCGAGuccaacGCGCAGAUGGCCGCCu -3' miRNA: 3'- -CCCGUaGCUC------CGCGUCUACCGGCGGu -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 59192 | 0.71 | 0.369134 |
Target: 5'- gGGGCAccggCGAcggcuggauGGUGCAGAaGGCCGCgGa -3' miRNA: 3'- -CCCGUa---GCU---------CCGCGUCUaCCGGCGgU- -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 83970 | 0.71 | 0.385234 |
Target: 5'- aGGGCAgCGGcGGCGCGGGcgGGCaCGUCu -3' miRNA: 3'- -CCCGUaGCU-CCGCGUCUa-CCG-GCGGu -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 23091 | 0.68 | 0.542664 |
Target: 5'- cGGCAUCGuGcGCGCGG-UGGucagcaacuucaaccCCGCCGu -3' miRNA: 3'- cCCGUAGCuC-CGCGUCuACC---------------GGCGGU- -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 82316 | 0.68 | 0.539737 |
Target: 5'- aGGGCAcCGA-GCGCAGGgacauguccaccauGCCGCCGa -3' miRNA: 3'- -CCCGUaGCUcCGCGUCUac------------CGGCGGU- -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 133498 | 0.68 | 0.538762 |
Target: 5'- -cGuCGUCGgcGGcGCGCAGcacAUGGCCGCCGu -3' miRNA: 3'- ccC-GUAGC--UC-CGCGUC---UACCGGCGGU- -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 96094 | 0.68 | 0.538762 |
Target: 5'- gGGGCAcgCGGGcGCgGCGGAggacaugcGGCCGCgCAg -3' miRNA: 3'- -CCCGUa-GCUC-CG-CGUCUa-------CCGGCG-GU- -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 45531 | 0.68 | 0.529049 |
Target: 5'- cGGCGUCGGgagccGGUGCuGGAgucgGcGCCGCCGu -3' miRNA: 3'- cCCGUAGCU-----CCGCG-UCUa---C-CGGCGGU- -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 40509 | 0.68 | 0.529049 |
Target: 5'- cGGCGaucgaagaCGAGGUGCGGcAUGcaGCCGCCGc -3' miRNA: 3'- cCCGUa-------GCUCCGCGUC-UAC--CGGCGGU- -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 860 | 0.68 | 0.529049 |
Target: 5'- cGGGCAgcgCG-GGCGCGGccgGGCggaagagcgCGCCGa -3' miRNA: 3'- -CCCGUa--GCuCCGCGUCua-CCG---------GCGGU- -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 56435 | 0.69 | 0.50032 |
Target: 5'- cGGGCAgcagcgCGuggacGGCGCGG-UGGCCGagaCCAa -3' miRNA: 3'- -CCCGUa-----GCu----CCGCGUCuACCGGC---GGU- -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 3422 | 0.69 | 0.50032 |
Target: 5'- aGGGcCGUCGGGuCGCAGccgagcucuAUGaGCCGCCu -3' miRNA: 3'- -CCC-GUAGCUCcGCGUC---------UAC-CGGCGGu -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 83331 | 0.69 | 0.472302 |
Target: 5'- gGGGCGcggcgCGAGGCGCcccGGGaGGCCGaCUg -3' miRNA: 3'- -CCCGUa----GCUCCGCG---UCUaCCGGC-GGu -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 52174 | 0.7 | 0.45407 |
Target: 5'- cGGCuUCGAcgGcGCGCAGAcGGCCGaCCGc -3' miRNA: 3'- cCCGuAGCU--C-CGCGUCUaCCGGC-GGU- -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 84892 | 0.71 | 0.401791 |
Target: 5'- cGGCcgCGGGGgGCGGugcggcGGUCGCCGc -3' miRNA: 3'- cCCGuaGCUCCgCGUCua----CCGGCGGU- -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 94090 | 0.71 | 0.385234 |
Target: 5'- cGGGCAccCGAGGgGCGG-UGGaCGCCu -3' miRNA: 3'- -CCCGUa-GCUCCgCGUCuACCgGCGGu -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 130724 | 0.66 | 0.698116 |
Target: 5'- uGGaGCucGUCGA-GCGCucGUGGCCGCUg -3' miRNA: 3'- -CC-CG--UAGCUcCGCGucUACCGGCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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