miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25518 3' -52.6 NC_005337.1 + 39667 0.66 0.961907
Target:  5'- gGGGCGCGUGGCCccgggcacGUACGugcGCUUCUu -3'
miRNA:   3'- -CUCGUGUACUGGca------CAUGC---CGAAGAu -5'
25518 3' -52.6 NC_005337.1 + 130786 0.66 0.95816
Target:  5'- uGGGCGCc--GCCG-GUGCGGCUgCUGc -3'
miRNA:   3'- -CUCGUGuacUGGCaCAUGCCGAaGAU- -5'
25518 3' -52.6 NC_005337.1 + 131398 0.66 0.95816
Target:  5'- gGGGC-CGUGAUCGUGUucccgcuggcgcGCGGCUcCg- -3'
miRNA:   3'- -CUCGuGUACUGGCACA------------UGCCGAaGau -5'
25518 3' -52.6 NC_005337.1 + 54249 0.67 0.940681
Target:  5'- cGGCGCGUccgGGCCGgGUGCGGCg---- -3'
miRNA:   3'- cUCGUGUA---CUGGCaCAUGCCGaagau -5'
25518 3' -52.6 NC_005337.1 + 43701 0.67 0.940681
Target:  5'- cGGGUccACGUGAgcucguCCGUGUACGGCa---- -3'
miRNA:   3'- -CUCG--UGUACU------GGCACAUGCCGaagau -5'
25518 3' -52.6 NC_005337.1 + 111147 0.67 0.924863
Target:  5'- gGGGCGCAUGGCCGcGaccACGGCg---- -3'
miRNA:   3'- -CUCGUGUACUGGCaCa--UGCCGaagau -5'
25518 3' -52.6 NC_005337.1 + 48801 0.68 0.919067
Target:  5'- aAGCugGUGGCCGUGUucgACaGCUcgCUGc -3'
miRNA:   3'- cUCGugUACUGGCACA---UGcCGAa-GAU- -5'
25518 3' -52.6 NC_005337.1 + 99977 0.68 0.906692
Target:  5'- uAGCgGCAUGAUCGUG-GCGGcCUUCg- -3'
miRNA:   3'- cUCG-UGUACUGGCACaUGCC-GAAGau -5'
25518 3' -52.6 NC_005337.1 + 12890 0.7 0.830087
Target:  5'- cGGGCAaCAUGugCuUGUGCGGCaUCUu -3'
miRNA:   3'- -CUCGU-GUACugGcACAUGCCGaAGAu -5'
25518 3' -52.6 NC_005337.1 + 51235 0.7 0.821217
Target:  5'- cAGCAgCAUGcugacgguguccGCCGUGUACGGCgUCa- -3'
miRNA:   3'- cUCGU-GUAC------------UGGCACAUGCCGaAGau -5'
25518 3' -52.6 NC_005337.1 + 92191 0.77 0.45297
Target:  5'- cGAGCGCGUGACCGUGgcgcACGGUa---- -3'
miRNA:   3'- -CUCGUGUACUGGCACa---UGCCGaagau -5'
25518 3' -52.6 NC_005337.1 + 68916 0.83 0.216923
Target:  5'- aAGCGCGUGugCGUGUGCGGCaUCg- -3'
miRNA:   3'- cUCGUGUACugGCACAUGCCGaAGau -5'
25518 3' -52.6 NC_005337.1 + 124051 1.06 0.006579
Target:  5'- gGAGCACAUGACCGUGUACGGCUUCUAc -3'
miRNA:   3'- -CUCGUGUACUGGCACAUGCCGAAGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.