miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25519 5' -51.3 NC_005337.1 + 20731 0.67 0.984246
Target:  5'- gUACaGaCAGCGGUUgGC-AUCGUGUUUg -3'
miRNA:   3'- gGUG-C-GUCGCCAAgCGaUAGCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 95677 0.67 0.984246
Target:  5'- uUACGCAGguaCGGcuuggCGCUGUCGgggauguaGUCCg -3'
miRNA:   3'- gGUGCGUC---GCCaa---GCGAUAGCa-------UAGG- -5'
25519 5' -51.3 NC_005337.1 + 104559 0.67 0.984246
Target:  5'- aCCGCGCGcGCGuGcgCGCcUcgCGcGUCCg -3'
miRNA:   3'- -GGUGCGU-CGC-CaaGCG-AuaGCaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 38903 0.67 0.982295
Target:  5'- gUCGCGCGGCcg-UCGCUGUUGccUUCg -3'
miRNA:   3'- -GGUGCGUCGccaAGCGAUAGCauAGG- -5'
25519 5' -51.3 NC_005337.1 + 76397 0.67 0.982295
Target:  5'- aCCGUGCGcGCGGggCGCUggCGcccGUCCu -3'
miRNA:   3'- -GGUGCGU-CGCCaaGCGAuaGCa--UAGG- -5'
25519 5' -51.3 NC_005337.1 + 118783 0.67 0.980166
Target:  5'- -gACGcCGGCGGcggCGCcGUCGUG-CCg -3'
miRNA:   3'- ggUGC-GUCGCCaa-GCGaUAGCAUaGG- -5'
25519 5' -51.3 NC_005337.1 + 52583 0.67 0.980166
Target:  5'- aCgGCGCGGCGG--CGCUggCGg--CCa -3'
miRNA:   3'- -GgUGCGUCGCCaaGCGAuaGCauaGG- -5'
25519 5' -51.3 NC_005337.1 + 13773 0.67 0.980166
Target:  5'- -aACGCGGCgaGGggCGCcAggucguagcUCGUGUCCg -3'
miRNA:   3'- ggUGCGUCG--CCaaGCGaU---------AGCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 60358 0.67 0.980166
Target:  5'- cCCACGaugcgcccCAGCGGcaucUCGCUGcccaggcagaccUCGaUGUCCg -3'
miRNA:   3'- -GGUGC--------GUCGCCa---AGCGAU------------AGC-AUAGG- -5'
25519 5' -51.3 NC_005337.1 + 90718 0.68 0.975347
Target:  5'- gCGCGCGGuCGGggUCGCag-CG-GUCCa -3'
miRNA:   3'- gGUGCGUC-GCCa-AGCGauaGCaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 70797 0.68 0.975347
Target:  5'- gCCAUGCGGCGGcuggugagCGUcAUCGacgacAUCCa -3'
miRNA:   3'- -GGUGCGUCGCCaa------GCGaUAGCa----UAGG- -5'
25519 5' -51.3 NC_005337.1 + 70350 0.68 0.97264
Target:  5'- uCCGCaCGGCGGUgcgcCGCcgcacgugGUCGcGUCCg -3'
miRNA:   3'- -GGUGcGUCGCCAa---GCGa-------UAGCaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 89830 0.68 0.97264
Target:  5'- aCACGCAGCaGGUggcgCGCUucaCGg--CCu -3'
miRNA:   3'- gGUGCGUCG-CCAa---GCGAua-GCauaGG- -5'
25519 5' -51.3 NC_005337.1 + 65271 0.68 0.969724
Target:  5'- aCACgGCGGCGGcgaUCGCgcggAUCGUcUUCu -3'
miRNA:   3'- gGUG-CGUCGCCa--AGCGa---UAGCAuAGG- -5'
25519 5' -51.3 NC_005337.1 + 120237 0.68 0.969724
Target:  5'- gCCAUGgAGCGGUaccCGCagAUgGUGUCUc -3'
miRNA:   3'- -GGUGCgUCGCCAa--GCGa-UAgCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 104310 0.68 0.969724
Target:  5'- -gGCGCGGCGG--CGCUcugCGUgcGUCCc -3'
miRNA:   3'- ggUGCGUCGCCaaGCGAua-GCA--UAGG- -5'
25519 5' -51.3 NC_005337.1 + 80633 0.68 0.969724
Target:  5'- gCGCGUGGCGGaagaCGUaGUCGUGcCCg -3'
miRNA:   3'- gGUGCGUCGCCaa--GCGaUAGCAUaGG- -5'
25519 5' -51.3 NC_005337.1 + 71526 0.68 0.969724
Target:  5'- gCCGCGUcGCGGa--GCUgGUCGUGcCCa -3'
miRNA:   3'- -GGUGCGuCGCCaagCGA-UAGCAUaGG- -5'
25519 5' -51.3 NC_005337.1 + 101178 0.68 0.969724
Target:  5'- aCCACacaggGCAGCGGgccgcgUCGCUGgugCGaugCCu -3'
miRNA:   3'- -GGUG-----CGUCGCCa-----AGCGAUa--GCauaGG- -5'
25519 5' -51.3 NC_005337.1 + 126205 0.68 0.969116
Target:  5'- gUCGCGCGuccucGCGG-UCGCggaggaggccCGUGUCCg -3'
miRNA:   3'- -GGUGCGU-----CGCCaAGCGaua-------GCAUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.