Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25520 | 3' | -48.5 | NC_005337.1 | + | 51498 | 0.68 | 0.992969 |
Target: 5'- cGGugGGGuucgugcaccCGAUCAucauggcgcUCUUCGGCg -3' miRNA: 3'- cCCugCCCuuuu------GCUAGU---------AGAAGCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 71952 | 0.69 | 0.992337 |
Target: 5'- uGGGcuCGGGcAAGACGGUCAUCgcgCuGCu -3' miRNA: 3'- -CCCu-GCCC-UUUUGCUAGUAGaa-GcUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 56579 | 0.69 | 0.991185 |
Target: 5'- cGGGACcccguGGAGAGCGAgu-UCgUCGACc -3' miRNA: 3'- -CCCUGc----CCUUUUGCUaguAGaAGCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 23084 | 0.69 | 0.991185 |
Target: 5'- cGGGGucCGGGAAGACGGuguaccugcucUCGcUCUUCcgGACg -3' miRNA: 3'- -CCCU--GCCCUUUUGCU-----------AGU-AGAAG--CUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 38248 | 0.69 | 0.989901 |
Target: 5'- aGGGCGGGc--GCgGAUCAUUUcgCGACg -3' miRNA: 3'- cCCUGCCCuuuUG-CUAGUAGAa-GCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 62498 | 0.69 | 0.988475 |
Target: 5'- cGGGCGGGGcgGCcgccuauUUAUUUUCGACa -3' miRNA: 3'- cCCUGCCCUuuUGcu-----AGUAGAAGCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 85411 | 0.69 | 0.988475 |
Target: 5'- cGGGCGGGGAcGCGcacUCGUCcaUGACg -3' miRNA: 3'- cCCUGCCCUUuUGCu--AGUAGaaGCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 48319 | 0.69 | 0.986897 |
Target: 5'- gGGGcACGGGGAuguGCGuggacugCUUCGACu -3' miRNA: 3'- -CCC-UGCCCUUu--UGCuagua--GAAGCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 50980 | 0.69 | 0.986897 |
Target: 5'- cGGGCGGGGcgccgcGCGuUCGUCgUCGGCc -3' miRNA: 3'- cCCUGCCCUuu----UGCuAGUAGaAGCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 51122 | 0.7 | 0.983247 |
Target: 5'- -cGGCGGGAGGGCGAgaUgAUCgcCGACu -3' miRNA: 3'- ccCUGCCCUUUUGCU--AgUAGaaGCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 107082 | 0.7 | 0.983247 |
Target: 5'- aGGGggugccgcuguGCGcGGAgccucaAGACG-UCGUCUUCGACg -3' miRNA: 3'- -CCC-----------UGC-CCU------UUUGCuAGUAGAAGCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 34551 | 0.7 | 0.981157 |
Target: 5'- -cGGCGGGAGAGCG-UCcuGUCcgCGACg -3' miRNA: 3'- ccCUGCCCUUUUGCuAG--UAGaaGCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 83662 | 0.7 | 0.978878 |
Target: 5'- aGGGAccCGGGggGAgGGggcuuccgCcgCUUCGGCg -3' miRNA: 3'- -CCCU--GCCCuuUUgCUa-------GuaGAAGCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 39613 | 0.71 | 0.964346 |
Target: 5'- cGGGCGGGA--GCGgAUCGUCUcgCGGg -3' miRNA: 3'- cCCUGCCCUuuUGC-UAGUAGAa-GCUg -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 10344 | 0.71 | 0.960759 |
Target: 5'- cGGGGCGuGGGGAACG-UCGUCacgccgUCaGACa -3' miRNA: 3'- -CCCUGC-CCUUUUGCuAGUAGa-----AG-CUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 52540 | 0.71 | 0.960759 |
Target: 5'- uGGACGGGA--GCG-UCAUCguguacaUCGGCu -3' miRNA: 3'- cCCUGCCCUuuUGCuAGUAGa------AGCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 93641 | 0.72 | 0.943944 |
Target: 5'- cGGGACcuGGAuGACGA-CGUCUUCGuCg -3' miRNA: 3'- -CCCUGc-CCUuUUGCUaGUAGAAGCuG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 34041 | 0.74 | 0.883787 |
Target: 5'- cGGGCGGGAccGCGAUCAcgCgcacgCGGCg -3' miRNA: 3'- cCCUGCCCUuuUGCUAGUa-Gaa---GCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 117870 | 0.75 | 0.860818 |
Target: 5'- gGGGACGGGGcgucugucgcAGACGggCGaCUUUGGCg -3' miRNA: 3'- -CCCUGCCCU----------UUUGCuaGUaGAAGCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 116975 | 0.78 | 0.709597 |
Target: 5'- aGGACGaGGAGGGCGGgcaCAUCcUCGACa -3' miRNA: 3'- cCCUGC-CCUUUUGCUa--GUAGaAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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