miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 58037 0.67 0.782272
Target:  5'- -cGCGCucuuCGaCGGCGG-CGUGCUcgCCa -3'
miRNA:   3'- caCGCGcu--GC-GCCGCUaGCACGAa-GG- -5'
25520 5' -57.2 NC_005337.1 + 52576 0.67 0.817818
Target:  5'- -cGCGgggaCGGCGCGGCGG-CGcugGCggCCa -3'
miRNA:   3'- caCGC----GCUGCGCCGCUaGCa--CGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 118765 0.67 0.781354
Target:  5'- cUGCGCGACGUccuagaugacgccGGCGGcggcgccgUCGUGCcgcgcgcgCCg -3'
miRNA:   3'- cACGCGCUGCG-------------CCGCU--------AGCACGaa------GG- -5'
25520 5' -57.2 NC_005337.1 + 85888 0.67 0.809161
Target:  5'- cGUGCGCGgcucgaagGCGCGGCuGA-CGUuCUcgUCCa -3'
miRNA:   3'- -CACGCGC--------UGCGCCG-CUaGCAcGA--AGG- -5'
25520 5' -57.2 NC_005337.1 + 919 0.67 0.817818
Target:  5'- -aGCGCGGCgGCGGCGG-CGagGCggCg -3'
miRNA:   3'- caCGCGCUG-CGCCGCUaGCa-CGaaGg -5'
25520 5' -57.2 NC_005337.1 + 44852 0.67 0.800345
Target:  5'- -cGCGCGGCGauGCGucCGUGCUa-- -3'
miRNA:   3'- caCGCGCUGCgcCGCuaGCACGAagg -5'
25520 5' -57.2 NC_005337.1 + 52089 0.67 0.782272
Target:  5'- cGUGCGCGcC-CGGCGGccgCGUGCa--- -3'
miRNA:   3'- -CACGCGCuGcGCCGCUa--GCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 38594 0.67 0.782272
Target:  5'- -gGCGUGGCGCGaGCGcagcgugggCGUGCUggggaacCCg -3'
miRNA:   3'- caCGCGCUGCGC-CGCua-------GCACGAa------GG- -5'
25520 5' -57.2 NC_005337.1 + 83884 0.67 0.809161
Target:  5'- -cGCGCGGCGCgcccccgcgccaGGCGccCGUGC--CCg -3'
miRNA:   3'- caCGCGCUGCG------------CCGCuaGCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 65533 0.67 0.782272
Target:  5'- gGUGCGCGuGCGCucgaaagaGGUGAUCGcgGaCUUCa -3'
miRNA:   3'- -CACGCGC-UGCG--------CCGCUAGCa-C-GAAGg -5'
25520 5' -57.2 NC_005337.1 + 34010 0.67 0.817818
Target:  5'- uUGCGCG-CGCGGUag--GUGCUcCCg -3'
miRNA:   3'- cACGCGCuGCGCCGcuagCACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 130176 0.67 0.809161
Target:  5'- -cGCGCG-CGCGGUGAggaCGcUGCUg-- -3'
miRNA:   3'- caCGCGCuGCGCCGCUa--GC-ACGAagg -5'
25520 5' -57.2 NC_005337.1 + 78154 0.67 0.782272
Target:  5'- -cGCGC-ACGCuGGCGAUgcCGUGCg-CCu -3'
miRNA:   3'- caCGCGcUGCG-CCGCUA--GCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 43883 0.67 0.808287
Target:  5'- cGUGCGCGACGCgcacacguaccacGGCcAUCucaGUGCcgggcUCCg -3'
miRNA:   3'- -CACGCGCUGCG-------------CCGcUAG---CACGa----AGG- -5'
25520 5' -57.2 NC_005337.1 + 80373 0.67 0.800345
Target:  5'- -cGCGcCGGuCGCGGaccCGGUCGUGUggcugCCg -3'
miRNA:   3'- caCGC-GCU-GCGCC---GCUAGCACGaa---GG- -5'
25520 5' -57.2 NC_005337.1 + 56137 0.67 0.800345
Target:  5'- cGUGCGCGGCGUGcaGCGGggCG-GCaaggCCg -3'
miRNA:   3'- -CACGCGCUGCGC--CGCUa-GCaCGaa--GG- -5'
25520 5' -57.2 NC_005337.1 + 86518 0.68 0.734916
Target:  5'- -cGCGuUGGCGCGGCGggCGccCUUCUc -3'
miRNA:   3'- caCGC-GCUGCGCCGCuaGCacGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 97808 0.68 0.725144
Target:  5'- -cGUGCGGCagGUGGUGAagacCGUGCgUCCg -3'
miRNA:   3'- caCGCGCUG--CGCCGCUa---GCACGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 118918 0.68 0.725144
Target:  5'- aGUGCGCGccuggaagcgucGCGCgGGCGcagCGUGCgucgcgcgauaUUCCa -3'
miRNA:   3'- -CACGCGC------------UGCG-CCGCua-GCACG-----------AAGG- -5'
25520 5' -57.2 NC_005337.1 + 47669 0.68 0.754186
Target:  5'- cUGCuGCGAgG-GcGCGAUCGUGCgccugcggUCCg -3'
miRNA:   3'- cACG-CGCUgCgC-CGCUAGCACGa-------AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.