miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 110965 0.71 0.594091
Target:  5'- cUGCGCGGcCGCGuCGAcgUCGUGCguguugacgUCCa -3'
miRNA:   3'- cACGCGCU-GCGCcGCU--AGCACGa--------AGG- -5'
25520 5' -57.2 NC_005337.1 + 3270 0.7 0.644869
Target:  5'- gGUGCGCGGCggccacgugcaGCGGCG-UCGUGUc--- -3'
miRNA:   3'- -CACGCGCUG-----------CGCCGCuAGCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 87915 0.7 0.655026
Target:  5'- -gGCGCGccuGCGcCGGCGcuUCGUGCacgCCg -3'
miRNA:   3'- caCGCGC---UGC-GCCGCu-AGCACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 80630 0.7 0.644869
Target:  5'- -aGCGCG-CGUGGCGGaagacguagUCGUGCccgaacUCCu -3'
miRNA:   3'- caCGCGCuGCGCCGCU---------AGCACGa-----AGG- -5'
25520 5' -57.2 NC_005337.1 + 59266 0.7 0.60422
Target:  5'- gGUGCGCGucaGCGGCGGccgccUCGUGUa--- -3'
miRNA:   3'- -CACGCGCug-CGCCGCU-----AGCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 34617 0.7 0.654011
Target:  5'- -gGCGCGcccagccGCGCGGCGAUgcCGcGCacgUCCg -3'
miRNA:   3'- caCGCGC-------UGCGCCGCUA--GCaCGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 102018 0.7 0.634702
Target:  5'- cGUGCaGCG-CGCGGgcgUGAUCGcguacgccUGCUUCCc -3'
miRNA:   3'- -CACG-CGCuGCGCC---GCUAGC--------ACGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 56094 0.7 0.624533
Target:  5'- -aGCGCGACGUGGaGAagGUGCUc-- -3'
miRNA:   3'- caCGCGCUGCGCCgCUagCACGAagg -5'
25520 5' -57.2 NC_005337.1 + 1567 0.7 0.602193
Target:  5'- -cGCGCGcaugGCGCGGCccaGGUUGUGCgcgacgauguugUCCa -3'
miRNA:   3'- caCGCGC----UGCGCCG---CUAGCACGa-----------AGG- -5'
25520 5' -57.2 NC_005337.1 + 99296 0.7 0.60422
Target:  5'- -gGCGCGGCGCGGCGuUCc-GCagcgCCg -3'
miRNA:   3'- caCGCGCUGCGCCGCuAGcaCGaa--GG- -5'
25520 5' -57.2 NC_005337.1 + 71875 0.7 0.624533
Target:  5'- -cGgGCGAgGCGGCGGUgGUGaa-CCg -3'
miRNA:   3'- caCgCGCUgCGCCGCUAgCACgaaGG- -5'
25520 5' -57.2 NC_005337.1 + 126425 0.7 0.634702
Target:  5'- -gGCGCG-CGaCGGCGcgCGUGCgcguguaCCa -3'
miRNA:   3'- caCGCGCuGC-GCCGCuaGCACGaa-----GG- -5'
25520 5' -57.2 NC_005337.1 + 69586 0.7 0.644869
Target:  5'- cUGCGCGACGaggaGGacugcuCGGUCGUGCgcaUCUu -3'
miRNA:   3'- cACGCGCUGCg---CC------GCUAGCACGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 38898 0.7 0.634702
Target:  5'- -cGCGCGucGCGCGGCcGUCGcUGUUgCCu -3'
miRNA:   3'- caCGCGC--UGCGCCGcUAGC-ACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 93286 0.7 0.624533
Target:  5'- gGUGCGuCGGCGCcugguGGCGGUCGaGCUa-- -3'
miRNA:   3'- -CACGC-GCUGCG-----CCGCUAGCaCGAagg -5'
25520 5' -57.2 NC_005337.1 + 76552 0.7 0.644869
Target:  5'- uUGCGCGugGCGuuGUGGUCGUcGUgcaCCg -3'
miRNA:   3'- cACGCGCugCGC--CGCUAGCA-CGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 1643 0.7 0.655026
Target:  5'- aUGCGCGcgccCGCGGCGA-CGaGCUUggCCg -3'
miRNA:   3'- cACGCGCu---GCGCCGCUaGCaCGAA--GG- -5'
25520 5' -57.2 NC_005337.1 + 99524 0.69 0.685356
Target:  5'- cUGCGaCGACGCGGCccg-GUGCgccgCCg -3'
miRNA:   3'- cACGC-GCUGCGCCGcuagCACGaa--GG- -5'
25520 5' -57.2 NC_005337.1 + 49365 0.69 0.68435
Target:  5'- -gGCGCG-UGCGGCGGcuacuguucgaccUCGUGCUcacggUCUu -3'
miRNA:   3'- caCGCGCuGCGCCGCU-------------AGCACGA-----AGG- -5'
25520 5' -57.2 NC_005337.1 + 128322 0.69 0.675278
Target:  5'- -cGCGCGGCGCGaGCGcgacUGCUcggUCCa -3'
miRNA:   3'- caCGCGCUGCGC-CGCuagcACGA---AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.