miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 128322 0.69 0.675278
Target:  5'- -cGCGCGGCGCGaGCGcgacUGCUcggUCCa -3'
miRNA:   3'- caCGCGCUGCGC-CGCuagcACGA---AGG- -5'
25520 5' -57.2 NC_005337.1 + 121187 0.69 0.675278
Target:  5'- -cGCGCGAU-UGGCG-UCGccGCUUCCg -3'
miRNA:   3'- caCGCGCUGcGCCGCuAGCa-CGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 78557 0.69 0.675278
Target:  5'- -gGCGCGcCGUGcGCG-UCGUGCUUg- -3'
miRNA:   3'- caCGCGCuGCGC-CGCuAGCACGAAgg -5'
25520 5' -57.2 NC_005337.1 + 93746 0.69 0.682337
Target:  5'- -cGCGCGcCGCGGCGGcugcaugccgcaccUCGU-CUUCg -3'
miRNA:   3'- caCGCGCuGCGCCGCU--------------AGCAcGAAGg -5'
25520 5' -57.2 NC_005337.1 + 49365 0.69 0.68435
Target:  5'- -gGCGCG-UGCGGCGGcuacuguucgaccUCGUGCUcacggUCUu -3'
miRNA:   3'- caCGCGCuGCGCCGCU-------------AGCACGA-----AGG- -5'
25520 5' -57.2 NC_005337.1 + 39926 0.69 0.685356
Target:  5'- -cGUGUGGCGCGcGCuGAgcgucaCGUGCUUCa -3'
miRNA:   3'- caCGCGCUGCGC-CG-CUa-----GCACGAAGg -5'
25520 5' -57.2 NC_005337.1 + 35117 0.69 0.685356
Target:  5'- -cGCGCGGCGCGGaCGcccaGUGCggCg -3'
miRNA:   3'- caCGCGCUGCGCC-GCuag-CACGaaGg -5'
25520 5' -57.2 NC_005337.1 + 99524 0.69 0.685356
Target:  5'- cUGCGaCGACGCGGCccg-GUGCgccgCCg -3'
miRNA:   3'- cACGC-GCUGCGCCGcuagCACGaa--GG- -5'
25520 5' -57.2 NC_005337.1 + 59735 0.69 0.685356
Target:  5'- -cGCGCcGCGCGGCGGagCGcGUcUCCg -3'
miRNA:   3'- caCGCGcUGCGCCGCUa-GCaCGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 95461 0.69 0.69539
Target:  5'- -aGCGCGGCGUaGCGcccCGUGCgcagCCa -3'
miRNA:   3'- caCGCGCUGCGcCGCua-GCACGaa--GG- -5'
25520 5' -57.2 NC_005337.1 + 36897 0.69 0.69539
Target:  5'- -cGCGCGGCGCGGCGug---GCcgUCa -3'
miRNA:   3'- caCGCGCUGCGCCGCuagcaCGa-AGg -5'
25520 5' -57.2 NC_005337.1 + 73443 0.69 0.705372
Target:  5'- cGUGCGCcaguucuucGCGCGGCGGUgccgCGUGC--CCg -3'
miRNA:   3'- -CACGCGc--------UGCGCCGCUA----GCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 44565 0.69 0.705372
Target:  5'- -aGUGaCGACGCGGCcgccgcGAUCG-GCgucUCCg -3'
miRNA:   3'- caCGC-GCUGCGCCG------CUAGCaCGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 748 0.69 0.714304
Target:  5'- -aGCGCGGCGCccgcggccucgacGGCGGccaUGUGCUgcgcgCCg -3'
miRNA:   3'- caCGCGCUGCG-------------CCGCUa--GCACGAa----GG- -5'
25520 5' -57.2 NC_005337.1 + 748 0.69 0.714304
Target:  5'- -aGCGCGGCGCccgcggccucgacGGCGGccaUGUGCUgcgcgCCg -3'
miRNA:   3'- caCGCGCUGCG-------------CCGCUa--GCACGAa----GG- -5'
25520 5' -57.2 NC_005337.1 + 91075 0.69 0.715293
Target:  5'- -cGCGaaggaCGGCGCGGUGAcCGUGCUc-- -3'
miRNA:   3'- caCGC-----GCUGCGCCGCUaGCACGAagg -5'
25520 5' -57.2 NC_005337.1 + 123647 0.69 0.715293
Target:  5'- cUGCaGCGGCGCGaCGGUCGUcCUggcgCCg -3'
miRNA:   3'- cACG-CGCUGCGCcGCUAGCAcGAa---GG- -5'
25520 5' -57.2 NC_005337.1 + 1188 0.69 0.715293
Target:  5'- gGUGCGCGAgCGCGGCacGggCGcGCaUUUCg -3'
miRNA:   3'- -CACGCGCU-GCGCCG--CuaGCaCG-AAGG- -5'
25520 5' -57.2 NC_005337.1 + 94036 0.69 0.715293
Target:  5'- -gGCGCGGCGCGGCGcggcCGacGaCUUCUc -3'
miRNA:   3'- caCGCGCUGCGCCGCua--GCa-C-GAAGG- -5'
25520 5' -57.2 NC_005337.1 + 80224 0.69 0.715293
Target:  5'- -cGCGCGcACGCGGUcggGGUCG-GCguacaucUCCa -3'
miRNA:   3'- caCGCGC-UGCGCCG---CUAGCaCGa------AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.