miRNA display CGI


Results 81 - 100 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 97808 0.68 0.725144
Target:  5'- -cGUGCGGCagGUGGUGAagacCGUGCgUCCg -3'
miRNA:   3'- caCGCGCUG--CGCCGCUa---GCACGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 73345 0.68 0.725144
Target:  5'- -gGCGCGGCaGUGGCGcgucgCGUGCccgaCCg -3'
miRNA:   3'- caCGCGCUG-CGCCGCua---GCACGaa--GG- -5'
25520 5' -57.2 NC_005337.1 + 118918 0.68 0.725144
Target:  5'- aGUGCGCGccuggaagcgucGCGCgGGCGcagCGUGCgucgcgcgauaUUCCa -3'
miRNA:   3'- -CACGCGC------------UGCG-CCGCua-GCACG-----------AAGG- -5'
25520 5' -57.2 NC_005337.1 + 15874 0.68 0.725144
Target:  5'- aUGCGCGACGUGGUGAugaUCaucGCcaUCCu -3'
miRNA:   3'- cACGCGCUGCGCCGCU---AGca-CGa-AGG- -5'
25520 5' -57.2 NC_005337.1 + 70099 0.68 0.734916
Target:  5'- -aGCGCGAuUGCGGCGccagCGUGgUggCCu -3'
miRNA:   3'- caCGCGCU-GCGCCGCua--GCACgAa-GG- -5'
25520 5' -57.2 NC_005337.1 + 86518 0.68 0.734916
Target:  5'- -cGCGuUGGCGCGGCGggCGccCUUCUc -3'
miRNA:   3'- caCGC-GCUGCGCCGCuaGCacGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 61216 0.68 0.734916
Target:  5'- gGUGCaCGACgGUGGCGAUggacagccgcagCGUGCccUCCg -3'
miRNA:   3'- -CACGcGCUG-CGCCGCUA------------GCACGa-AGG- -5'
25520 5' -57.2 NC_005337.1 + 54277 0.68 0.744599
Target:  5'- -aGCGCcGCGCGGCGA-CGaaaaaacaUGCUUUg -3'
miRNA:   3'- caCGCGcUGCGCCGCUaGC--------ACGAAGg -5'
25520 5' -57.2 NC_005337.1 + 95389 0.68 0.748446
Target:  5'- -cGCGCGACGCGcGCGAacuccgagcagaacCGcGCgUCCa -3'
miRNA:   3'- caCGCGCUGCGC-CGCUa-------------GCaCGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 132120 0.68 0.753232
Target:  5'- cGUGCGCGGCaggcuccgcaacuGCGaGCuGGUgGUGCUgaaCCg -3'
miRNA:   3'- -CACGCGCUG-------------CGC-CG-CUAgCACGAa--GG- -5'
25520 5' -57.2 NC_005337.1 + 122468 0.68 0.754186
Target:  5'- aGUGCGaggcaGAgGUGGCGGUCaugGCgaccgUCCg -3'
miRNA:   3'- -CACGCg----CUgCGCCGCUAGca-CGa----AGG- -5'
25520 5' -57.2 NC_005337.1 + 47669 0.68 0.754186
Target:  5'- cUGCuGCGAgG-GcGCGAUCGUGCgccugcggUCCg -3'
miRNA:   3'- cACG-CGCUgCgC-CGCUAGCACGa-------AGG- -5'
25520 5' -57.2 NC_005337.1 + 66197 0.68 0.754186
Target:  5'- -gGgGCGACGgGGaGcUCGUGCgUUCCu -3'
miRNA:   3'- caCgCGCUGCgCCgCuAGCACG-AAGG- -5'
25520 5' -57.2 NC_005337.1 + 62762 0.68 0.754186
Target:  5'- --cCGCGACGCGGCGGuggaacgcgaagUCGggcaccGCgUCCg -3'
miRNA:   3'- cacGCGCUGCGCCGCU------------AGCa-----CGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 123931 0.68 0.754186
Target:  5'- cUGCgGCGGCGaCGGCcg-CGUGCagcUCCa -3'
miRNA:   3'- cACG-CGCUGC-GCCGcuaGCACGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 30656 0.68 0.754186
Target:  5'- -cGCGCGGCGCGGa-GUUGUGgUUg- -3'
miRNA:   3'- caCGCGCUGCGCCgcUAGCACgAAgg -5'
25520 5' -57.2 NC_005337.1 + 63983 0.68 0.754186
Target:  5'- aUG-GUGAUGUGGUGcgCGUGCUugugCCg -3'
miRNA:   3'- cACgCGCUGCGCCGCuaGCACGAa---GG- -5'
25520 5' -57.2 NC_005337.1 + 8006 0.68 0.763666
Target:  5'- cGUGCGUGGCuaucGCGGCG-UCGcucaGCaggUCCa -3'
miRNA:   3'- -CACGCGCUG----CGCCGCuAGCa---CGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 43842 0.68 0.763666
Target:  5'- -gGCcgGCGGCGCGGUggaGAUCGUGUa--- -3'
miRNA:   3'- caCG--CGCUGCGCCG---CUAGCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 130146 0.68 0.763666
Target:  5'- -cGCGCG-CGCuGGCGcUCGcgcGCUUUCg -3'
miRNA:   3'- caCGCGCuGCG-CCGCuAGCa--CGAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.