miRNA display CGI


Results 101 - 120 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 43842 0.68 0.763666
Target:  5'- -gGCcgGCGGCGCGGUggaGAUCGUGUa--- -3'
miRNA:   3'- caCG--CGCUGCGCCG---CUAGCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 98724 0.68 0.763666
Target:  5'- -cGCGCGGCGCccUGcgCGUGCUgaCCg -3'
miRNA:   3'- caCGCGCUGCGccGCuaGCACGAa-GG- -5'
25520 5' -57.2 NC_005337.1 + 80623 0.68 0.763666
Target:  5'- -cGCGCugcauCGCGGCGAUCacgGCgcacUCCu -3'
miRNA:   3'- caCGCGcu---GCGCCGCUAGca-CGa---AGG- -5'
25520 5' -57.2 NC_005337.1 + 130146 0.68 0.763666
Target:  5'- -cGCGCG-CGCuGGCGcUCGcgcGCUUUCg -3'
miRNA:   3'- caCGCGCuGCG-CCGCuAGCa--CGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 46461 0.68 0.773031
Target:  5'- -cGCGCGGCGCGcCGG-CGaGCUcCCg -3'
miRNA:   3'- caCGCGCUGCGCcGCUaGCaCGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 13927 0.68 0.773031
Target:  5'- cGUGgGCgGGCGCaGCcccGUCGUGCU-CCa -3'
miRNA:   3'- -CACgCG-CUGCGcCGc--UAGCACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 57277 0.68 0.773031
Target:  5'- -cGCGCGGgGcCGGCGcgCGcgGCUgcggcgCCg -3'
miRNA:   3'- caCGCGCUgC-GCCGCuaGCa-CGAa-----GG- -5'
25520 5' -57.2 NC_005337.1 + 95905 0.68 0.773031
Target:  5'- cGUGCucGCGGCGaCGGCGGcCGcGCgcgCCu -3'
miRNA:   3'- -CACG--CGCUGC-GCCGCUaGCaCGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 118765 0.67 0.781354
Target:  5'- cUGCGCGACGUccuagaugacgccGGCGGcggcgccgUCGUGCcgcgcgcgCCg -3'
miRNA:   3'- cACGCGCUGCG-------------CCGCU--------AGCACGaa------GG- -5'
25520 5' -57.2 NC_005337.1 + 99905 0.67 0.782272
Target:  5'- -gGCuCGcCGCGGCGGcgcuccUCGUGCUgcuguguuUCCa -3'
miRNA:   3'- caCGcGCuGCGCCGCU------AGCACGA--------AGG- -5'
25520 5' -57.2 NC_005337.1 + 52089 0.67 0.782272
Target:  5'- cGUGCGCGcC-CGGCGGccgCGUGCa--- -3'
miRNA:   3'- -CACGCGCuGcGCCGCUa--GCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 92524 0.67 0.782272
Target:  5'- cUGCGCggccgccccaugGACGCGGUGcgCGaGCUcgccUCCu -3'
miRNA:   3'- cACGCG------------CUGCGCCGCuaGCaCGA----AGG- -5'
25520 5' -57.2 NC_005337.1 + 38594 0.67 0.782272
Target:  5'- -gGCGUGGCGCGaGCGcagcgugggCGUGCUggggaacCCg -3'
miRNA:   3'- caCGCGCUGCGC-CGCua-------GCACGAa------GG- -5'
25520 5' -57.2 NC_005337.1 + 58037 0.67 0.782272
Target:  5'- -cGCGCucuuCGaCGGCGG-CGUGCUcgCCa -3'
miRNA:   3'- caCGCGcu--GC-GCCGCUaGCACGAa-GG- -5'
25520 5' -57.2 NC_005337.1 + 78154 0.67 0.782272
Target:  5'- -cGCGC-ACGCuGGCGAUgcCGUGCg-CCu -3'
miRNA:   3'- caCGCGcUGCG-CCGCUA--GCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 65533 0.67 0.782272
Target:  5'- gGUGCGCGuGCGCucgaaagaGGUGAUCGcgGaCUUCa -3'
miRNA:   3'- -CACGCGC-UGCG--------CCGCUAGCa-C-GAAGg -5'
25520 5' -57.2 NC_005337.1 + 68927 0.67 0.785931
Target:  5'- cGUGUGCgGcaucgacccguacccGCGCGGCGGcaccggCGUGCccUUCCa -3'
miRNA:   3'- -CACGCG-C---------------UGCGCCGCUa-----GCACG--AAGG- -5'
25520 5' -57.2 NC_005337.1 + 65796 0.67 0.790475
Target:  5'- -aGCGCGGCgcccgguGCGGCGGcgUCGaaggUGCcgUCCu -3'
miRNA:   3'- caCGCGCUG-------CGCCGCU--AGC----ACGa-AGG- -5'
25520 5' -57.2 NC_005337.1 + 78983 0.67 0.791379
Target:  5'- gGUGCGUGGCGCGGCuGUag-GCc-CCg -3'
miRNA:   3'- -CACGCGCUGCGCCGcUAgcaCGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 16749 0.67 0.791379
Target:  5'- uGUGCGCGGuCaCGGCGcgccggcugauGUCGUGCa-CCg -3'
miRNA:   3'- -CACGCGCU-GcGCCGC-----------UAGCACGaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.