Results 81 - 100 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
25520 | 5' | -57.2 | NC_005337.1 | + | 98724 | 0.68 | 0.763666 |
Target: 5'- -cGCGCGGCGCccUGcgCGUGCUgaCCg -3' miRNA: 3'- caCGCGCUGCGccGCuaGCACGAa-GG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 14864 | 0.68 | 0.763666 |
Target: 5'- -gGCGCGACG-GGCGAga---CUUCCg -3' miRNA: 3'- caCGCGCUGCgCCGCUagcacGAAGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 8006 | 0.68 | 0.763666 |
Target: 5'- cGUGCGUGGCuaucGCGGCG-UCGcucaGCaggUCCa -3' miRNA: 3'- -CACGCGCUG----CGCCGCuAGCa---CGa--AGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 80623 | 0.68 | 0.763666 |
Target: 5'- -cGCGCugcauCGCGGCGAUCacgGCgcacUCCu -3' miRNA: 3'- caCGCGcu---GCGCCGCUAGca-CGa---AGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 43842 | 0.68 | 0.763666 |
Target: 5'- -gGCcgGCGGCGCGGUggaGAUCGUGUa--- -3' miRNA: 3'- caCG--CGCUGCGCCG---CUAGCACGaagg -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 84262 | 0.68 | 0.763666 |
Target: 5'- uGUGCGuCGACGUGGUcaccguuccGUCGUGCa-CCa -3' miRNA: 3'- -CACGC-GCUGCGCCGc--------UAGCACGaaGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 130146 | 0.68 | 0.763666 |
Target: 5'- -cGCGCG-CGCuGGCGcUCGcgcGCUUUCg -3' miRNA: 3'- caCGCGCuGCG-CCGCuAGCa--CGAAGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 63983 | 0.68 | 0.754186 |
Target: 5'- aUG-GUGAUGUGGUGcgCGUGCUugugCCg -3' miRNA: 3'- cACgCGCUGCGCCGCuaGCACGAa---GG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 66197 | 0.68 | 0.754186 |
Target: 5'- -gGgGCGACGgGGaGcUCGUGCgUUCCu -3' miRNA: 3'- caCgCGCUGCgCCgCuAGCACG-AAGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 47669 | 0.68 | 0.754186 |
Target: 5'- cUGCuGCGAgG-GcGCGAUCGUGCgccugcggUCCg -3' miRNA: 3'- cACG-CGCUgCgC-CGCUAGCACGa-------AGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 30656 | 0.68 | 0.754186 |
Target: 5'- -cGCGCGGCGCGGa-GUUGUGgUUg- -3' miRNA: 3'- caCGCGCUGCGCCgcUAGCACgAAgg -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 62762 | 0.68 | 0.754186 |
Target: 5'- --cCGCGACGCGGCGGuggaacgcgaagUCGggcaccGCgUCCg -3' miRNA: 3'- cacGCGCUGCGCCGCU------------AGCa-----CGaAGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 123931 | 0.68 | 0.754186 |
Target: 5'- cUGCgGCGGCGaCGGCcg-CGUGCagcUCCa -3' miRNA: 3'- cACG-CGCUGC-GCCGcuaGCACGa--AGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 122468 | 0.68 | 0.754186 |
Target: 5'- aGUGCGaggcaGAgGUGGCGGUCaugGCgaccgUCCg -3' miRNA: 3'- -CACGCg----CUgCGCCGCUAGca-CGa----AGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 132120 | 0.68 | 0.753232 |
Target: 5'- cGUGCGCGGCaggcuccgcaacuGCGaGCuGGUgGUGCUgaaCCg -3' miRNA: 3'- -CACGCGCUG-------------CGC-CG-CUAgCACGAa--GG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 95389 | 0.68 | 0.748446 |
Target: 5'- -cGCGCGACGCGcGCGAacuccgagcagaacCGcGCgUCCa -3' miRNA: 3'- caCGCGCUGCGC-CGCUa-------------GCaCGaAGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 54277 | 0.68 | 0.744599 |
Target: 5'- -aGCGCcGCGCGGCGA-CGaaaaaacaUGCUUUg -3' miRNA: 3'- caCGCGcUGCGCCGCUaGC--------ACGAAGg -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 86518 | 0.68 | 0.734916 |
Target: 5'- -cGCGuUGGCGCGGCGggCGccCUUCUc -3' miRNA: 3'- caCGC-GCUGCGCCGCuaGCacGAAGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 70099 | 0.68 | 0.734916 |
Target: 5'- -aGCGCGAuUGCGGCGccagCGUGgUggCCu -3' miRNA: 3'- caCGCGCU-GCGCCGCua--GCACgAa-GG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 61216 | 0.68 | 0.734916 |
Target: 5'- gGUGCaCGACgGUGGCGAUggacagccgcagCGUGCccUCCg -3' miRNA: 3'- -CACGcGCUG-CGCCGCUA------------GCACGa-AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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