miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 44565 0.69 0.705372
Target:  5'- -aGUGaCGACGCGGCcgccgcGAUCG-GCgucUCCg -3'
miRNA:   3'- caCGC-GCUGCGCCG------CUAGCaCGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 44789 0.67 0.809161
Target:  5'- uUGCGCGACGUGcGCaacAUC-UGCUgCCg -3'
miRNA:   3'- cACGCGCUGCGC-CGc--UAGcACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 44852 0.67 0.800345
Target:  5'- -cGCGCGGCGauGCGucCGUGCUa-- -3'
miRNA:   3'- caCGCGCUGCgcCGCuaGCACGAagg -5'
25520 5' -57.2 NC_005337.1 + 45945 0.71 0.573921
Target:  5'- -cGCGCG-CGcCGGCGcgCGUGgCgUCCa -3'
miRNA:   3'- caCGCGCuGC-GCCGCuaGCAC-GaAGG- -5'
25520 5' -57.2 NC_005337.1 + 46461 0.68 0.773031
Target:  5'- -cGCGCGGCGCGcCGG-CGaGCUcCCg -3'
miRNA:   3'- caCGCGCUGCGCcGCUaGCaCGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 47669 0.68 0.754186
Target:  5'- cUGCuGCGAgG-GcGCGAUCGUGCgccugcggUCCg -3'
miRNA:   3'- cACG-CGCUgCgC-CGCUAGCACGa-------AGG- -5'
25520 5' -57.2 NC_005337.1 + 47968 0.66 0.850706
Target:  5'- -cGCGCGAgUGCGGCG--CGgacGCgUCCa -3'
miRNA:   3'- caCGCGCU-GCGCCGCuaGCa--CGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 48944 0.72 0.51458
Target:  5'- -gGCGUGAagGCGGUGAUggaCGUGCUggCCa -3'
miRNA:   3'- caCGCGCUg-CGCCGCUA---GCACGAa-GG- -5'
25520 5' -57.2 NC_005337.1 + 49365 0.69 0.68435
Target:  5'- -gGCGCG-UGCGGCGGcuacuguucgaccUCGUGCUcacggUCUu -3'
miRNA:   3'- caCGCGCuGCGCCGCU-------------AGCACGA-----AGG- -5'
25520 5' -57.2 NC_005337.1 + 49455 0.72 0.543987
Target:  5'- cGUGCGCGAUGCuGGCGu---UGCUggCCg -3'
miRNA:   3'- -CACGCGCUGCG-CCGCuagcACGAa-GG- -5'
25520 5' -57.2 NC_005337.1 + 50409 0.66 0.856922
Target:  5'- -cGCGCGucggugacggaGCGGCGGgc--GCUUCCg -3'
miRNA:   3'- caCGCGCug---------CGCCGCUagcaCGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 52053 0.66 0.858456
Target:  5'- cUGCaCGGCGgaGGCGGgccgCGUGCUguaCCu -3'
miRNA:   3'- cACGcGCUGCg-CCGCUa---GCACGAa--GG- -5'
25520 5' -57.2 NC_005337.1 + 52089 0.67 0.782272
Target:  5'- cGUGCGCGcC-CGGCGGccgCGUGCa--- -3'
miRNA:   3'- -CACGCGCuGcGCCGCUa--GCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 52576 0.67 0.817818
Target:  5'- -cGCGgggaCGGCGCGGCGG-CGcugGCggCCa -3'
miRNA:   3'- caCGC----GCUGCGCCGCUaGCa--CGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 53854 0.66 0.866004
Target:  5'- cUGCGCGcCGCGGaCGGcUCcUGCUgguUCUg -3'
miRNA:   3'- cACGCGCuGCGCC-GCU-AGcACGA---AGG- -5'
25520 5' -57.2 NC_005337.1 + 54277 0.68 0.744599
Target:  5'- -aGCGCcGCGCGGCGA-CGaaaaaacaUGCUUUg -3'
miRNA:   3'- caCGCGcUGCGCCGCUaGC--------ACGAAGg -5'
25520 5' -57.2 NC_005337.1 + 56094 0.7 0.624533
Target:  5'- -aGCGCGACGUGGaGAagGUGCUc-- -3'
miRNA:   3'- caCGCGCUGCGCCgCUagCACGAagg -5'
25520 5' -57.2 NC_005337.1 + 56137 0.67 0.800345
Target:  5'- cGUGCGCGGCGUGcaGCGGggCG-GCaaggCCg -3'
miRNA:   3'- -CACGCGCUGCGC--CGCUa-GCaCGaa--GG- -5'
25520 5' -57.2 NC_005337.1 + 56206 0.66 0.866004
Target:  5'- -cGCGCuaccugcagGACGUGGCGGaggggcggaUCGUGC--CCa -3'
miRNA:   3'- caCGCG---------CUGCGCCGCU---------AGCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 56264 0.71 0.563894
Target:  5'- -gGC-CGACGCGGUGGagUCGcUGCUgUCCa -3'
miRNA:   3'- caCGcGCUGCGCCGCU--AGC-ACGA-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.