miRNA display CGI


Results 81 - 100 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 57277 0.68 0.773031
Target:  5'- -cGCGCGGgGcCGGCGcgCGcgGCUgcggcgCCg -3'
miRNA:   3'- caCGCGCUgC-GCCGCuaGCa-CGAa-----GG- -5'
25520 5' -57.2 NC_005337.1 + 58037 0.67 0.782272
Target:  5'- -cGCGCucuuCGaCGGCGG-CGUGCUcgCCa -3'
miRNA:   3'- caCGCGcu--GC-GCCGCUaGCACGAa-GG- -5'
25520 5' -57.2 NC_005337.1 + 58243 0.66 0.850706
Target:  5'- -aGCGCaaguccGGCGCGGCGGUC----UUCCg -3'
miRNA:   3'- caCGCG------CUGCGCCGCUAGcacgAAGG- -5'
25520 5' -57.2 NC_005337.1 + 59266 0.7 0.60422
Target:  5'- gGUGCGCGucaGCGGCGGccgccUCGUGUa--- -3'
miRNA:   3'- -CACGCGCug-CGCCGCU-----AGCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 59735 0.69 0.685356
Target:  5'- -cGCGCcGCGCGGCGGagCGcGUcUCCg -3'
miRNA:   3'- caCGCGcUGCGCCGCUa-GCaCGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 61094 0.66 0.866004
Target:  5'- -gGCGaCGAgGCGGUGGUaGUGCgcguugagcUCCu -3'
miRNA:   3'- caCGC-GCUgCGCCGCUAgCACGa--------AGG- -5'
25520 5' -57.2 NC_005337.1 + 61216 0.68 0.734916
Target:  5'- gGUGCaCGACgGUGGCGAUggacagccgcagCGUGCccUCCg -3'
miRNA:   3'- -CACGcGCUG-CGCCGCUA------------GCACGa-AGG- -5'
25520 5' -57.2 NC_005337.1 + 62762 0.68 0.754186
Target:  5'- --cCGCGACGCGGCGGuggaacgcgaagUCGggcaccGCgUCCg -3'
miRNA:   3'- cacGCGCUGCGCCGCU------------AGCa-----CGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 63983 0.68 0.754186
Target:  5'- aUG-GUGAUGUGGUGcgCGUGCUugugCCg -3'
miRNA:   3'- cACgCGCUGCGCCGCuaGCACGAa---GG- -5'
25520 5' -57.2 NC_005337.1 + 65533 0.67 0.782272
Target:  5'- gGUGCGCGuGCGCucgaaagaGGUGAUCGcgGaCUUCa -3'
miRNA:   3'- -CACGCGC-UGCG--------CCGCUAGCa-C-GAAGg -5'
25520 5' -57.2 NC_005337.1 + 65796 0.67 0.790475
Target:  5'- -aGCGCGGCgcccgguGCGGCGGcgUCGaaggUGCcgUCCu -3'
miRNA:   3'- caCGCGCUG-------CGCCGCU--AGC----ACGa-AGG- -5'
25520 5' -57.2 NC_005337.1 + 66000 0.66 0.866004
Target:  5'- cGUGCGUccCGUgGGCGAgcgCGUGUgggCCa -3'
miRNA:   3'- -CACGCGcuGCG-CCGCUa--GCACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 66197 0.68 0.754186
Target:  5'- -gGgGCGACGgGGaGcUCGUGCgUUCCu -3'
miRNA:   3'- caCgCGCUGCgCCgCuAGCACG-AAGG- -5'
25520 5' -57.2 NC_005337.1 + 67281 0.66 0.866004
Target:  5'- -aGCGCGACuugaGCcccgcguugaGGCGGUUGUaGCggUCCa -3'
miRNA:   3'- caCGCGCUG----CG----------CCGCUAGCA-CGa-AGG- -5'
25520 5' -57.2 NC_005337.1 + 67524 0.71 0.553914
Target:  5'- -cGCGCG-UGCGGCGGUUGgugaaguaggGCgugUCCg -3'
miRNA:   3'- caCGCGCuGCGCCGCUAGCa---------CGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 67925 0.66 0.834625
Target:  5'- -aGUGC--CGCGGUGGUCGcGCU-CCa -3'
miRNA:   3'- caCGCGcuGCGCCGCUAGCaCGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 68927 0.67 0.785931
Target:  5'- cGUGUGCgGcaucgacccguacccGCGCGGCGGcaccggCGUGCccUUCCa -3'
miRNA:   3'- -CACGCG-C---------------UGCGCCGCUa-----GCACG--AAGG- -5'
25520 5' -57.2 NC_005337.1 + 69251 0.74 0.422003
Target:  5'- cGUGCcgGUGACGCuGGUGGUgG-GCUUCCa -3'
miRNA:   3'- -CACG--CGCUGCG-CCGCUAgCaCGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 69586 0.7 0.644869
Target:  5'- cUGCGCGACGaggaGGacugcuCGGUCGUGCgcaUCUu -3'
miRNA:   3'- cACGCGCUGCg---CC------GCUAGCACGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 70099 0.68 0.734916
Target:  5'- -aGCGCGAuUGCGGCGccagCGUGgUggCCu -3'
miRNA:   3'- caCGCGCU-GCGCCGCua--GCACgAa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.