Results 101 - 120 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25520 | 5' | -57.2 | NC_005337.1 | + | 70360 | 0.66 | 0.861499 |
Target: 5'- gGUGCGcCGcCGCacGUGGUCGcguccguagaaguacUGCUUCCg -3' miRNA: 3'- -CACGC-GCuGCGc-CGCUAGC---------------ACGAAGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 71279 | 0.73 | 0.467111 |
Target: 5'- aUGCGCcGCGUGGCGcUgGUgcGCUUCCg -3' miRNA: 3'- cACGCGcUGCGCCGCuAgCA--CGAAGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 71875 | 0.7 | 0.624533 |
Target: 5'- -cGgGCGAgGCGGCGGUgGUGaa-CCg -3' miRNA: 3'- caCgCGCUgCGCCGCUAgCACgaaGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 73345 | 0.68 | 0.725144 |
Target: 5'- -gGCGCGGCaGUGGCGcgucgCGUGCccgaCCg -3' miRNA: 3'- caCGCGCUG-CGCCGCua---GCACGaa--GG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 73443 | 0.69 | 0.705372 |
Target: 5'- cGUGCGCcaguucuucGCGCGGCGGUgccgCGUGC--CCg -3' miRNA: 3'- -CACGCGc--------UGCGCCGCUA----GCACGaaGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 74544 | 0.67 | 0.791379 |
Target: 5'- -cGCGCuccgccGCGCGGCGcgUGaUGCUggCCg -3' miRNA: 3'- caCGCGc-----UGCGCCGCuaGC-ACGAa-GG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 76552 | 0.7 | 0.644869 |
Target: 5'- uUGCGCGugGCGuuGUGGUCGUcGUgcaCCg -3' miRNA: 3'- cACGCGCugCGC--CGCUAGCA-CGaa-GG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 77639 | 0.66 | 0.834625 |
Target: 5'- aGUGCGUGACGUaGaGCGcGUCGUagacGCggCCg -3' miRNA: 3'- -CACGCGCUGCG-C-CGC-UAGCA----CGaaGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 78154 | 0.67 | 0.782272 |
Target: 5'- -cGCGC-ACGCuGGCGAUgcCGUGCg-CCu -3' miRNA: 3'- caCGCGcUGCG-CCGCUA--GCACGaaGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 78557 | 0.69 | 0.675278 |
Target: 5'- -gGCGCGcCGUGcGCG-UCGUGCUUg- -3' miRNA: 3'- caCGCGCuGCGC-CGCuAGCACGAAgg -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 78983 | 0.67 | 0.791379 |
Target: 5'- gGUGCGUGGCGCGGCuGUag-GCc-CCg -3' miRNA: 3'- -CACGCGCUGCGCCGcUAgcaCGaaGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 80150 | 0.8 | 0.174482 |
Target: 5'- -cGCGCGGCGCGGCcGUCGcGCU-CCa -3' miRNA: 3'- caCGCGCUGCGCCGcUAGCaCGAaGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 80224 | 0.69 | 0.715293 |
Target: 5'- -cGCGCGcACGCGGUcggGGUCG-GCguacaucUCCa -3' miRNA: 3'- caCGCGC-UGCGCCG---CUAGCaCGa------AGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 80274 | 0.89 | 0.049198 |
Target: 5'- cGUGCGCGACGCGGUGAUCcggcucacaaacgcGUGCgggUCCa -3' miRNA: 3'- -CACGCGCUGCGCCGCUAG--------------CACGa--AGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 80373 | 0.67 | 0.800345 |
Target: 5'- -cGCGcCGGuCGCGGaccCGGUCGUGUggcugCCg -3' miRNA: 3'- caCGC-GCU-GCGCC---GCUAGCACGaa---GG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 80623 | 0.68 | 0.763666 |
Target: 5'- -cGCGCugcauCGCGGCGAUCacgGCgcacUCCu -3' miRNA: 3'- caCGCGcu---GCGCCGCUAGca-CGa---AGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 80630 | 0.7 | 0.644869 |
Target: 5'- -aGCGCG-CGUGGCGGaagacguagUCGUGCccgaacUCCu -3' miRNA: 3'- caCGCGCuGCGCCGCU---------AGCACGa-----AGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 83884 | 0.67 | 0.809161 |
Target: 5'- -cGCGCGGCGCgcccccgcgccaGGCGccCGUGC--CCg -3' miRNA: 3'- caCGCGCUGCG------------CCGCuaGCACGaaGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 84262 | 0.68 | 0.763666 |
Target: 5'- uGUGCGuCGACGUGGUcaccguuccGUCGUGCa-CCa -3' miRNA: 3'- -CACGC-GCUGCGCCGc--------UAGCACGaaGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 84901 | 0.73 | 0.48584 |
Target: 5'- -gGgGCGGUGCGGCGGUCGccGCcUCCg -3' miRNA: 3'- caCgCGCUGCGCCGCUAGCa-CGaAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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