miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 97808 0.68 0.725144
Target:  5'- -cGUGCGGCagGUGGUGAagacCGUGCgUCCg -3'
miRNA:   3'- caCGCGCUG--CGCCGCUa---GCACGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 97069 0.73 0.467111
Target:  5'- -cGCGCGgcGCGCGGUGGUC-UGCgugCCc -3'
miRNA:   3'- caCGCGC--UGCGCCGCUAGcACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 96884 0.66 0.84276
Target:  5'- aUGCGCGGCGUGGaCG-UCG-GCg--- -3'
miRNA:   3'- cACGCGCUGCGCC-GCuAGCaCGaagg -5'
25520 5' -57.2 NC_005337.1 + 96835 0.66 0.833802
Target:  5'- gGUGCGCaGcCGCGGCGuggCGUucccccgGCU-CCg -3'
miRNA:   3'- -CACGCG-CuGCGCCGCua-GCA-------CGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 96100 0.67 0.800345
Target:  5'- -cGCG-GGCGCGGCGGagGacaUGCggCCg -3'
miRNA:   3'- caCGCgCUGCGCCGCUagC---ACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 95905 0.68 0.773031
Target:  5'- cGUGCucGCGGCGaCGGCGGcCGcGCgcgCCu -3'
miRNA:   3'- -CACG--CGCUGC-GCCGCUaGCaCGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 95755 0.66 0.850706
Target:  5'- cGUGCacgauccccGCGAuCGCGGCGAcgUCGU-CggCCa -3'
miRNA:   3'- -CACG---------CGCU-GCGCCGCU--AGCAcGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 95461 0.69 0.69539
Target:  5'- -aGCGCGGCGUaGCGcccCGUGCgcagCCa -3'
miRNA:   3'- caCGCGCUGCGcCGCua-GCACGaa--GG- -5'
25520 5' -57.2 NC_005337.1 + 95389 0.68 0.748446
Target:  5'- -cGCGCGACGCGcGCGAacuccgagcagaacCGcGCgUCCa -3'
miRNA:   3'- caCGCGCUGCGC-CGCUa-------------GCaCGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 95007 0.71 0.583989
Target:  5'- uUGCGCGACaGCGGCGGcUGcUGCgcgUUCu -3'
miRNA:   3'- cACGCGCUG-CGCCGCUaGC-ACGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 94036 0.69 0.715293
Target:  5'- -gGCGCGGCGCGGCGcggcCGacGaCUUCUc -3'
miRNA:   3'- caCGCGCUGCGCCGCua--GCa-C-GAAGG- -5'
25520 5' -57.2 NC_005337.1 + 93746 0.69 0.682337
Target:  5'- -cGCGCGcCGCGGCGGcugcaugccgcaccUCGU-CUUCg -3'
miRNA:   3'- caCGCGCuGCGCCGCU--------------AGCAcGAAGg -5'
25520 5' -57.2 NC_005337.1 + 93286 0.7 0.624533
Target:  5'- gGUGCGuCGGCGCcugguGGCGGUCGaGCUa-- -3'
miRNA:   3'- -CACGC-GCUGCG-----CCGCUAGCaCGAagg -5'
25520 5' -57.2 NC_005337.1 + 92524 0.67 0.782272
Target:  5'- cUGCGCggccgccccaugGACGCGGUGcgCGaGCUcgccUCCu -3'
miRNA:   3'- cACGCG------------CUGCGCCGCuaGCaCGA----AGG- -5'
25520 5' -57.2 NC_005337.1 + 92395 0.66 0.858456
Target:  5'- -gGaCGCGACGuCGGgGA-CGUGCUggggCUc -3'
miRNA:   3'- caC-GCGCUGC-GCCgCUaGCACGAa---GG- -5'
25520 5' -57.2 NC_005337.1 + 92098 0.69 0.665165
Target:  5'- -cGCGCagcugGACGCGGUGuccgaGUCGgUGCUcuUCCa -3'
miRNA:   3'- caCGCG-----CUGCGCCGC-----UAGC-ACGA--AGG- -5'
25520 5' -57.2 NC_005337.1 + 92053 0.71 0.594091
Target:  5'- cGUGCGCGAacuCGCGGaCGAcCG-GCUguaCCg -3'
miRNA:   3'- -CACGCGCU---GCGCC-GCUaGCaCGAa--GG- -5'
25520 5' -57.2 NC_005337.1 + 91447 0.66 0.84276
Target:  5'- gGUGUccaccuGCGGCGUcugGGCGAgcacgauccCGUGCUUCg -3'
miRNA:   3'- -CACG------CGCUGCG---CCGCUa--------GCACGAAGg -5'
25520 5' -57.2 NC_005337.1 + 91214 0.66 0.84276
Target:  5'- -gGCGCGcCGcCGGUGGUCa-GCgcgUCCa -3'
miRNA:   3'- caCGCGCuGC-GCCGCUAGcaCGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 91075 0.69 0.715293
Target:  5'- -cGCGaaggaCGGCGCGGUGAcCGUGCUc-- -3'
miRNA:   3'- caCGC-----GCUGCGCCGCUaGCACGAagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.