miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 89943 0.66 0.826309
Target:  5'- -aGCGCGGCGUugauggcgucGGCGAucUCGuUGCUgcUCa -3'
miRNA:   3'- caCGCGCUGCG----------CCGCU--AGC-ACGA--AGg -5'
25520 5' -57.2 NC_005337.1 + 87915 0.7 0.655026
Target:  5'- -gGCGCGccuGCGcCGGCGcuUCGUGCacgCCg -3'
miRNA:   3'- caCGCGC---UGC-GCCGCu-AGCACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 86518 0.68 0.734916
Target:  5'- -cGCGuUGGCGCGGCGggCGccCUUCUc -3'
miRNA:   3'- caCGC-GCUGCGCCGCuaGCacGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 85888 0.67 0.809161
Target:  5'- cGUGCGCGgcucgaagGCGCGGCuGA-CGUuCUcgUCCa -3'
miRNA:   3'- -CACGCGC--------UGCGCCG-CUaGCAcGA--AGG- -5'
25520 5' -57.2 NC_005337.1 + 84901 0.73 0.48584
Target:  5'- -gGgGCGGUGCGGCGGUCGccGCcUCCg -3'
miRNA:   3'- caCgCGCUGCGCCGCUAGCa-CGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 84262 0.68 0.763666
Target:  5'- uGUGCGuCGACGUGGUcaccguuccGUCGUGCa-CCa -3'
miRNA:   3'- -CACGC-GCUGCGCCGc--------UAGCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 83884 0.67 0.809161
Target:  5'- -cGCGCGGCGCgcccccgcgccaGGCGccCGUGC--CCg -3'
miRNA:   3'- caCGCGCUGCG------------CCGCuaGCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 80630 0.7 0.644869
Target:  5'- -aGCGCG-CGUGGCGGaagacguagUCGUGCccgaacUCCu -3'
miRNA:   3'- caCGCGCuGCGCCGCU---------AGCACGa-----AGG- -5'
25520 5' -57.2 NC_005337.1 + 80623 0.68 0.763666
Target:  5'- -cGCGCugcauCGCGGCGAUCacgGCgcacUCCu -3'
miRNA:   3'- caCGCGcu---GCGCCGCUAGca-CGa---AGG- -5'
25520 5' -57.2 NC_005337.1 + 80373 0.67 0.800345
Target:  5'- -cGCGcCGGuCGCGGaccCGGUCGUGUggcugCCg -3'
miRNA:   3'- caCGC-GCU-GCGCC---GCUAGCACGaa---GG- -5'
25520 5' -57.2 NC_005337.1 + 80274 0.89 0.049198
Target:  5'- cGUGCGCGACGCGGUGAUCcggcucacaaacgcGUGCgggUCCa -3'
miRNA:   3'- -CACGCGCUGCGCCGCUAG--------------CACGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 80224 0.69 0.715293
Target:  5'- -cGCGCGcACGCGGUcggGGUCG-GCguacaucUCCa -3'
miRNA:   3'- caCGCGC-UGCGCCG---CUAGCaCGa------AGG- -5'
25520 5' -57.2 NC_005337.1 + 80150 0.8 0.174482
Target:  5'- -cGCGCGGCGCGGCcGUCGcGCU-CCa -3'
miRNA:   3'- caCGCGCUGCGCCGcUAGCaCGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 78983 0.67 0.791379
Target:  5'- gGUGCGUGGCGCGGCuGUag-GCc-CCg -3'
miRNA:   3'- -CACGCGCUGCGCCGcUAgcaCGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 78557 0.69 0.675278
Target:  5'- -gGCGCGcCGUGcGCG-UCGUGCUUg- -3'
miRNA:   3'- caCGCGCuGCGC-CGCuAGCACGAAgg -5'
25520 5' -57.2 NC_005337.1 + 78154 0.67 0.782272
Target:  5'- -cGCGC-ACGCuGGCGAUgcCGUGCg-CCu -3'
miRNA:   3'- caCGCGcUGCG-CCGCUA--GCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 77639 0.66 0.834625
Target:  5'- aGUGCGUGACGUaGaGCGcGUCGUagacGCggCCg -3'
miRNA:   3'- -CACGCGCUGCG-C-CGC-UAGCA----CGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 76552 0.7 0.644869
Target:  5'- uUGCGCGugGCGuuGUGGUCGUcGUgcaCCg -3'
miRNA:   3'- cACGCGCugCGC--CGCUAGCA-CGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 74544 0.67 0.791379
Target:  5'- -cGCGCuccgccGCGCGGCGcgUGaUGCUggCCg -3'
miRNA:   3'- caCGCGc-----UGCGCCGCuaGC-ACGAa-GG- -5'
25520 5' -57.2 NC_005337.1 + 73443 0.69 0.705372
Target:  5'- cGUGCGCcaguucuucGCGCGGCGGUgccgCGUGC--CCg -3'
miRNA:   3'- -CACGCGc--------UGCGCCGCUA----GCACGaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.