miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 99296 0.7 0.60422
Target:  5'- -gGCGCGGCGCGGCGuUCc-GCagcgCCg -3'
miRNA:   3'- caCGCGCUGCGCCGCuAGcaCGaa--GG- -5'
25520 5' -57.2 NC_005337.1 + 93286 0.7 0.624533
Target:  5'- gGUGCGuCGGCGCcugguGGCGGUCGaGCUa-- -3'
miRNA:   3'- -CACGC-GCUGCG-----CCGCUAGCaCGAagg -5'
25520 5' -57.2 NC_005337.1 + 95461 0.69 0.69539
Target:  5'- -aGCGCGGCGUaGCGcccCGUGCgcagCCa -3'
miRNA:   3'- caCGCGCUGCGcCGCua-GCACGaa--GG- -5'
25520 5' -57.2 NC_005337.1 + 44565 0.69 0.705372
Target:  5'- -aGUGaCGACGCGGCcgccgcGAUCG-GCgucUCCg -3'
miRNA:   3'- caCGC-GCUGCGCCG------CUAGCaCGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 73443 0.69 0.705372
Target:  5'- cGUGCGCcaguucuucGCGCGGCGGUgccgCGUGC--CCg -3'
miRNA:   3'- -CACGCGc--------UGCGCCGCUA----GCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 748 0.69 0.714304
Target:  5'- -aGCGCGGCGCccgcggccucgacGGCGGccaUGUGCUgcgcgCCg -3'
miRNA:   3'- caCGCGCUGCG-------------CCGCUa--GCACGAa----GG- -5'
25520 5' -57.2 NC_005337.1 + 123647 0.69 0.715293
Target:  5'- cUGCaGCGGCGCGaCGGUCGUcCUggcgCCg -3'
miRNA:   3'- cACG-CGCUGCGCcGCUAGCAcGAa---GG- -5'
25520 5' -57.2 NC_005337.1 + 1188 0.69 0.715293
Target:  5'- gGUGCGCGAgCGCGGCacGggCGcGCaUUUCg -3'
miRNA:   3'- -CACGCGCU-GCGCCG--CuaGCaCG-AAGG- -5'
25520 5' -57.2 NC_005337.1 + 80224 0.69 0.715293
Target:  5'- -cGCGCGcACGCGGUcggGGUCG-GCguacaucUCCa -3'
miRNA:   3'- caCGCGC-UGCGCCG---CUAGCaCGa------AGG- -5'
25520 5' -57.2 NC_005337.1 + 15874 0.68 0.725144
Target:  5'- aUGCGCGACGUGGUGAugaUCaucGCcaUCCu -3'
miRNA:   3'- cACGCGCUGCGCCGCU---AGca-CGa-AGG- -5'
25520 5' -57.2 NC_005337.1 + 99524 0.69 0.685356
Target:  5'- cUGCGaCGACGCGGCccg-GUGCgccgCCg -3'
miRNA:   3'- cACGC-GCUGCGCCGcuagCACGaa--GG- -5'
25520 5' -57.2 NC_005337.1 + 49365 0.69 0.68435
Target:  5'- -gGCGCG-UGCGGCGGcuacuguucgaccUCGUGCUcacggUCUu -3'
miRNA:   3'- caCGCGCuGCGCCGCU-------------AGCACGA-----AGG- -5'
25520 5' -57.2 NC_005337.1 + 126425 0.7 0.634702
Target:  5'- -gGCGCG-CGaCGGCGcgCGUGCgcguguaCCa -3'
miRNA:   3'- caCGCGCuGC-GCCGCuaGCACGaa-----GG- -5'
25520 5' -57.2 NC_005337.1 + 3270 0.7 0.644869
Target:  5'- gGUGCGCGGCggccacgugcaGCGGCG-UCGUGUc--- -3'
miRNA:   3'- -CACGCGCUG-----------CGCCGCuAGCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 69586 0.7 0.644869
Target:  5'- cUGCGCGACGaggaGGacugcuCGGUCGUGCgcaUCUu -3'
miRNA:   3'- cACGCGCUGCg---CC------GCUAGCACGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 80630 0.7 0.644869
Target:  5'- -aGCGCG-CGUGGCGGaagacguagUCGUGCccgaacUCCu -3'
miRNA:   3'- caCGCGCuGCGCCGCU---------AGCACGa-----AGG- -5'
25520 5' -57.2 NC_005337.1 + 1643 0.7 0.655026
Target:  5'- aUGCGCGcgccCGCGGCGA-CGaGCUUggCCg -3'
miRNA:   3'- cACGCGCu---GCGCCGCUaGCaCGAA--GG- -5'
25520 5' -57.2 NC_005337.1 + 26084 0.69 0.675278
Target:  5'- -aGCGCGGCGCGGgGAagCGccGCcggaugUCCa -3'
miRNA:   3'- caCGCGCUGCGCCgCUa-GCa-CGa-----AGG- -5'
25520 5' -57.2 NC_005337.1 + 100278 0.69 0.675278
Target:  5'- -cGCGCG-CGCaagaGGCGGUCcGUGCgcaccUUCCu -3'
miRNA:   3'- caCGCGCuGCG----CCGCUAG-CACG-----AAGG- -5'
25520 5' -57.2 NC_005337.1 + 128322 0.69 0.675278
Target:  5'- -cGCGCGGCGCGaGCGcgacUGCUcggUCCa -3'
miRNA:   3'- caCGCGCUGCGC-CGCuagcACGA---AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.