miRNA display CGI


Results 81 - 100 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 73443 0.69 0.705372
Target:  5'- cGUGCGCcaguucuucGCGCGGCGGUgccgCGUGC--CCg -3'
miRNA:   3'- -CACGCGc--------UGCGCCGCUA----GCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 80630 0.7 0.644869
Target:  5'- -aGCGCG-CGUGGCGGaagacguagUCGUGCccgaacUCCu -3'
miRNA:   3'- caCGCGCuGCGCCGCU---------AGCACGa-----AGG- -5'
25520 5' -57.2 NC_005337.1 + 1643 0.7 0.655026
Target:  5'- aUGCGCGcgccCGCGGCGA-CGaGCUUggCCg -3'
miRNA:   3'- cACGCGCu---GCGCCGCUaGCaCGAA--GG- -5'
25520 5' -57.2 NC_005337.1 + 26084 0.69 0.675278
Target:  5'- -aGCGCGGCGCGGgGAagCGccGCcggaugUCCa -3'
miRNA:   3'- caCGCGCUGCGCCgCUa-GCa-CGa-----AGG- -5'
25520 5' -57.2 NC_005337.1 + 100278 0.69 0.675278
Target:  5'- -cGCGCG-CGCaagaGGCGGUCcGUGCgcaccUUCCu -3'
miRNA:   3'- caCGCGCuGCG----CCGCUAG-CACG-----AAGG- -5'
25520 5' -57.2 NC_005337.1 + 128322 0.69 0.675278
Target:  5'- -cGCGCGGCGCGaGCGcgacUGCUcggUCCa -3'
miRNA:   3'- caCGCGCUGCGC-CGCuagcACGA---AGG- -5'
25520 5' -57.2 NC_005337.1 + 49365 0.69 0.68435
Target:  5'- -gGCGCG-UGCGGCGGcuacuguucgaccUCGUGCUcacggUCUu -3'
miRNA:   3'- caCGCGCuGCGCCGCU-------------AGCACGA-----AGG- -5'
25520 5' -57.2 NC_005337.1 + 99524 0.69 0.685356
Target:  5'- cUGCGaCGACGCGGCccg-GUGCgccgCCg -3'
miRNA:   3'- cACGC-GCUGCGCCGcuagCACGaa--GG- -5'
25520 5' -57.2 NC_005337.1 + 95461 0.69 0.69539
Target:  5'- -aGCGCGGCGUaGCGcccCGUGCgcagCCa -3'
miRNA:   3'- caCGCGCUGCGcCGCua-GCACGaa--GG- -5'
25520 5' -57.2 NC_005337.1 + 44565 0.69 0.705372
Target:  5'- -aGUGaCGACGCGGCcgccgcGAUCG-GCgucUCCg -3'
miRNA:   3'- caCGC-GCUGCGCCG------CUAGCaCGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 24387 0.72 0.495338
Target:  5'- -cGCGC-ACGUGGCGGaCGUGCUcgaCCg -3'
miRNA:   3'- caCGCGcUGCGCCGCUaGCACGAa--GG- -5'
25520 5' -57.2 NC_005337.1 + 106041 0.73 0.47643
Target:  5'- -cGCGCGACGgcguuuCGGUGAUCGUGUa--- -3'
miRNA:   3'- caCGCGCUGC------GCCGCUAGCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 4582 0.73 0.470827
Target:  5'- -cGCG-GGCGCGGCGAcugcgCGUGCUggugcaggagcguguUCCu -3'
miRNA:   3'- caCGCgCUGCGCCGCUa----GCACGA---------------AGG- -5'
25520 5' -57.2 NC_005337.1 + 35892 0.73 0.467111
Target:  5'- uGUGCGCgGACGCGuacGCGAgCGUGUUUUUa -3'
miRNA:   3'- -CACGCG-CUGCGC---CGCUaGCACGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 102416 0.73 0.439736
Target:  5'- -aGCGCGACGCGGUGGacauggaGUGgUUCUc -3'
miRNA:   3'- caCGCGCUGCGCCGCUag-----CACgAAGG- -5'
25520 5' -57.2 NC_005337.1 + 106560 0.74 0.396228
Target:  5'- -aGCGCGcUGCGGgaGAUCGUGCagCCg -3'
miRNA:   3'- caCGCGCuGCGCCg-CUAGCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 109465 0.76 0.340181
Target:  5'- cGUGUGCGuGCGCGcGUGggCGcGCUUCCg -3'
miRNA:   3'- -CACGCGC-UGCGC-CGCuaGCaCGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 127888 0.83 0.115919
Target:  5'- -cGCGCGGCGcCGGCGAgcgCGUGCgggCCg -3'
miRNA:   3'- caCGCGCUGC-GCCGCUa--GCACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 80274 0.89 0.049198
Target:  5'- cGUGCGCGACGCGGUGAUCcggcucacaaacgcGUGCgggUCCa -3'
miRNA:   3'- -CACGCGCUGCGCCGCUAG--------------CACGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 67281 0.66 0.866004
Target:  5'- -aGCGCGACuugaGCcccgcguugaGGCGGUUGUaGCggUCCa -3'
miRNA:   3'- caCGCGCUG----CG----------CCGCUAGCA-CGa-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.