miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 35117 0.69 0.685356
Target:  5'- -cGCGCGGCGCGGaCGcccaGUGCggCg -3'
miRNA:   3'- caCGCGCUGCGCC-GCuag-CACGaaGg -5'
25520 5' -57.2 NC_005337.1 + 91075 0.69 0.715293
Target:  5'- -cGCGaaggaCGGCGCGGUGAcCGUGCUc-- -3'
miRNA:   3'- caCGC-----GCUGCGCCGCUaGCACGAagg -5'
25520 5' -57.2 NC_005337.1 + 102416 0.73 0.439736
Target:  5'- -aGCGCGACGCGGUGGacauggaGUGgUUCUc -3'
miRNA:   3'- caCGCGCUGCGCCGCUag-----CACgAAGG- -5'
25520 5' -57.2 NC_005337.1 + 106041 0.73 0.47643
Target:  5'- -cGCGCGACGgcguuuCGGUGAUCGUGUa--- -3'
miRNA:   3'- caCGCGCUGC------GCCGCUAGCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 113163 0.72 0.524315
Target:  5'- gGUGCGCuGCGUGGCGGcCG-GCgUCCc -3'
miRNA:   3'- -CACGCGcUGCGCCGCUaGCaCGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 67524 0.71 0.553914
Target:  5'- -cGCGCG-UGCGGCGGUUGgugaaguaggGCgugUCCg -3'
miRNA:   3'- caCGCGCuGCGCCGCUAGCa---------CGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 95007 0.71 0.583989
Target:  5'- uUGCGCGACaGCGGCGGcUGcUGCgcgUUCu -3'
miRNA:   3'- cACGCGCUG-CGCCGCUaGC-ACGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 59266 0.7 0.60422
Target:  5'- gGUGCGCGucaGCGGCGGccgccUCGUGUa--- -3'
miRNA:   3'- -CACGCGCug-CGCCGCU-----AGCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 38898 0.7 0.634702
Target:  5'- -cGCGCGucGCGCGGCcGUCGcUGUUgCCu -3'
miRNA:   3'- caCGCGC--UGCGCCGcUAGC-ACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 87915 0.7 0.655026
Target:  5'- -gGCGCGccuGCGcCGGCGcuUCGUGCacgCCg -3'
miRNA:   3'- caCGCGC---UGC-GCCGCu-AGCACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 100399 0.66 0.84276
Target:  5'- aGUGCGCgGGCGCGcGCuacgaGAUCGacGCgcgCCa -3'
miRNA:   3'- -CACGCG-CUGCGC-CG-----CUAGCa-CGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 34010 0.67 0.817818
Target:  5'- uUGCGCG-CGCGGUag--GUGCUcCCg -3'
miRNA:   3'- cACGCGCuGCGCCGcuagCACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 97808 0.68 0.725144
Target:  5'- -cGUGCGGCagGUGGUGAagacCGUGCgUCCg -3'
miRNA:   3'- caCGCGCUG--CGCCGCUa---GCACGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 66197 0.68 0.754186
Target:  5'- -gGgGCGACGgGGaGcUCGUGCgUUCCu -3'
miRNA:   3'- caCgCGCUGCgCCgCuAGCACG-AAGG- -5'
25520 5' -57.2 NC_005337.1 + 84262 0.68 0.763666
Target:  5'- uGUGCGuCGACGUGGUcaccguuccGUCGUGCa-CCa -3'
miRNA:   3'- -CACGC-GCUGCGCCGc--------UAGCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 98724 0.68 0.763666
Target:  5'- -cGCGCGGCGCccUGcgCGUGCUgaCCg -3'
miRNA:   3'- caCGCGCUGCGccGCuaGCACGAa-GG- -5'
25520 5' -57.2 NC_005337.1 + 99905 0.67 0.782272
Target:  5'- -gGCuCGcCGCGGCGGcgcuccUCGUGCUgcuguguuUCCa -3'
miRNA:   3'- caCGcGCuGCGCCGCU------AGCACGA--------AGG- -5'
25520 5' -57.2 NC_005337.1 + 65796 0.67 0.790475
Target:  5'- -aGCGCGGCgcccgguGCGGCGGcgUCGaaggUGCcgUCCu -3'
miRNA:   3'- caCGCGCUG-------CGCCGCU--AGC----ACGa-AGG- -5'
25520 5' -57.2 NC_005337.1 + 80373 0.67 0.800345
Target:  5'- -cGCGcCGGuCGCGGaccCGGUCGUGUggcugCCg -3'
miRNA:   3'- caCGC-GCU-GCGCC---GCUAGCACGaa---GG- -5'
25520 5' -57.2 NC_005337.1 + 85888 0.67 0.809161
Target:  5'- cGUGCGCGgcucgaagGCGCGGCuGA-CGUuCUcgUCCa -3'
miRNA:   3'- -CACGCGC--------UGCGCCG-CUaGCAcGA--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.